Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29o23
(671 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039713-6|AAB96723.1| 829|Caenorhabditis elegans Hypothetical ... 60 2e-09
AY303575-1|AAP57297.1| 382|Caenorhabditis elegans cell death-re... 31 0.99
AC024791-9|AAF60653.1| 382|Caenorhabditis elegans Cell-death-re... 31 0.99
Z93382-2|CAB07612.2| 639|Caenorhabditis elegans Hypothetical pr... 29 3.0
U00052-5|AAK21423.1| 289|Caenorhabditis elegans Hypothetical pr... 29 3.0
AF025453-7|AAK31401.1| 253|Caenorhabditis elegans Hypothetical ... 29 3.0
AF016686-15|AAB66231.3| 572|Caenorhabditis elegans C-type lecti... 29 3.0
Z29095-12|CAB54287.2| 414|Caenorhabditis elegans Hypothetical p... 28 5.3
Z29095-11|CAB54286.2| 426|Caenorhabditis elegans Hypothetical p... 28 5.3
U88184-8|AAK31515.1| 301|Caenorhabditis elegans Hypothetical pr... 28 5.3
U61946-5|AAC24389.1| 391|Caenorhabditis elegans Hypothetical pr... 28 5.3
U20555-1|AAC46918.1| 839|Caenorhabditis elegans zinc finger pro... 27 9.2
L23645-6|AAO91714.1| 635|Caenorhabditis elegans Zinc finger pro... 27 9.2
L23645-4|AAK26137.1| 867|Caenorhabditis elegans Zinc finger pro... 27 9.2
>AF039713-6|AAB96723.1| 829|Caenorhabditis elegans Hypothetical
protein F57B10.6 protein.
Length = 829
Score = 59.7 bits (138), Expect = 2e-09
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Frame = +1
Query: 280 MGIKGLWSVLTPFSEKKSLHELRGETIAVDLSGWVCDSQNVTEHHVQPKLYLRNLFFRTV 459
MGI GLW ++ P + + L L G+ +A+D+S W+ +Q + QP +LR L R
Sbjct: 1 MGITGLWKIVEPTATEIPLECLEGKKLAIDVSIWIYQAQ-LAYPSDQPFPHLRLLVNRLS 59
Query: 460 YLLLAEINPIFVLEG-DAPELKRDVMATR 543
LL +I P+FV +G P LKR V+ R
Sbjct: 60 KLLFYKIRPVFVFDGPQVPPLKRQVLEAR 88
>AY303575-1|AAP57297.1| 382|Caenorhabditis elegans cell
death-related nuclease 1 protein.
Length = 382
Score = 30.7 bits (66), Expect = 0.99
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Frame = +1
Query: 280 MGIKGLWSVLTPFSEKK-SLHELR---GETIAVDLSGWVC--------DSQNVTEHHVQP 423
MGIKGL V+ + ++E++ G T+A+D S + D + +
Sbjct: 1 MGIKGLSQVIADNAPSAIKVNEMKAFFGRTVAIDASMCLYQFLIAVRQDGSQLQSEDGET 60
Query: 424 KLYLRNLFFRTVYLLLAEINPIFVLEGDAPELKRDVMATRN 546
+L + RTV + + P++V +G P++K + R+
Sbjct: 61 TSHLMGMLNRTVRMFENGVKPVYVFDGKPPDMKGGELEKRS 101
>AC024791-9|AAF60653.1| 382|Caenorhabditis elegans
Cell-death-related nuclease protein1 protein.
Length = 382
Score = 30.7 bits (66), Expect = 0.99
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Frame = +1
Query: 280 MGIKGLWSVLTPFSEKK-SLHELR---GETIAVDLSGWVC--------DSQNVTEHHVQP 423
MGIKGL V+ + ++E++ G T+A+D S + D + +
Sbjct: 1 MGIKGLSQVIADNAPSAIKVNEMKAFFGRTVAIDASMCLYQFLIAVRQDGSQLQSEDGET 60
Query: 424 KLYLRNLFFRTVYLLLAEINPIFVLEGDAPELKRDVMATRN 546
+L + RTV + + P++V +G P++K + R+
Sbjct: 61 TSHLMGMLNRTVRMFENGVKPVYVFDGKPPDMKGGELEKRS 101
>Z93382-2|CAB07612.2| 639|Caenorhabditis elegans Hypothetical
protein F45G2.3 protein.
Length = 639
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 280 MGIKGLWSVLTPFSEKKSLHELRGETIAVDLS 375
MGI GL + K ++ ELRG+++A+D+S
Sbjct: 1 MGISGLLPFVKNACRKGNILELRGKSVAIDVS 32
>U00052-5|AAK21423.1| 289|Caenorhabditis elegans Hypothetical
protein K02F3.8 protein.
Length = 289
Score = 29.1 bits (62), Expect = 3.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 477 NKSYICIGRRCTRTQKRCNGYSKCCP 554
N ++ C+G +K CN Y K CP
Sbjct: 260 NYNFYCVGDMSPEHEKFCNSYKKNCP 285
>AF025453-7|AAK31401.1| 253|Caenorhabditis elegans Hypothetical
protein C08F1.6 protein.
Length = 253
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 665 TTASTNSFKTFLNLFLETLGSFSLEQAFSDLGAAPRNWT 549
TT TN+ K + LFL G+F++ +F +L P +T
Sbjct: 147 TTTVTNAQKLIMILFLAIFGAFNICSSFIELRQFPDEYT 185
>AF016686-15|AAB66231.3| 572|Caenorhabditis elegans C-type lectin
protein 43 protein.
Length = 572
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 252 FYCNSMSK*NGYKRFVVCADSFQ*KEILA*ITGGNNCSRPLWLGL 386
+ C + SK + + D F L I+G NN +RP+WLGL
Sbjct: 215 YVCGNFSKGSNMVSVLEAQDDFT----LKLISGLNNLTRPIWLGL 255
>Z29095-12|CAB54287.2| 414|Caenorhabditis elegans Hypothetical
protein R10E11.3b protein.
Length = 414
Score = 28.3 bits (60), Expect = 5.3
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 2/108 (1%)
Frame = -1
Query: 635 FLNLFLETLGSFSLEQAFSDLGAAPRNWTAFRVAITSLLSSGAS--PSNTNIGFISANSR 462
F N + T+ +++ ++ A R+ T + +T L+ + P + G N
Sbjct: 108 FFNYLINTISETLIQEKIAEREKASRHGTLKKGNVTVNLAPATAGLPRSDEKGTSERNGG 167
Query: 461 YTVLKNRFLRYNFGWTWCSVTF*LSQTQPERSTAIVSPRNSCKDFFSL 318
TV N FL + TW F T R + + + +DF L
Sbjct: 168 ITVEGNEFLNKSDTTTWIHEIFQGILTNETRCLSCETVSSKDEDFLDL 215
>Z29095-11|CAB54286.2| 426|Caenorhabditis elegans Hypothetical
protein R10E11.3a protein.
Length = 426
Score = 28.3 bits (60), Expect = 5.3
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 2/108 (1%)
Frame = -1
Query: 635 FLNLFLETLGSFSLEQAFSDLGAAPRNWTAFRVAITSLLSSGAS--PSNTNIGFISANSR 462
F N + T+ +++ ++ A R+ T + +T L+ + P + G N
Sbjct: 120 FFNYLINTISETLIQEKIAEREKASRHGTLKKGNVTVNLAPATAGLPRSDEKGTSERNGG 179
Query: 461 YTVLKNRFLRYNFGWTWCSVTF*LSQTQPERSTAIVSPRNSCKDFFSL 318
TV N FL + TW F T R + + + +DF L
Sbjct: 180 ITVEGNEFLNKSDTTTWIHEIFQGILTNETRCLSCETVSSKDEDFLDL 227
>U88184-8|AAK31515.1| 301|Caenorhabditis elegans Hypothetical
protein F36H5.4 protein.
Length = 301
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 668 ETTASTNSFKTFLNLFLETLGSFSLEQAFSDLGAAPRNWTA 546
ETT T + K F+ LFL G F + +F DL + A
Sbjct: 184 ETTKVTKAQKVFIFLFLTLSGLFCISLSFIDLNPLADEYVA 224
>U61946-5|AAC24389.1| 391|Caenorhabditis elegans Hypothetical
protein F47C12.2 protein.
Length = 391
Score = 28.3 bits (60), Expect = 5.3
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +3
Query: 483 SYICIGRRCTRTQKRCNGYSKC 548
SY C C K+CNG++ C
Sbjct: 187 SYFCSSGSCISESKKCNGHNDC 208
>U20555-1|AAC46918.1| 839|Caenorhabditis elegans zinc finger
protein protein.
Length = 839
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 514 ELKRDVMATRNAVQFRGAAPRSEKACSSEKLPNVS 618
+ +RD +A R A + R AA +S+ + S+ PNV+
Sbjct: 496 DFQRDRVADRTAAERRAAAAQSQPSTSTNGGPNVT 530
>L23645-6|AAO91714.1| 635|Caenorhabditis elegans Zinc finger
protein protein 1,isoform c protein.
Length = 635
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 514 ELKRDVMATRNAVQFRGAAPRSEKACSSEKLPNVS 618
+ +RD +A R A + R AA +S+ + S+ PNV+
Sbjct: 264 DFQRDRVADRTAAERRAAAAQSQPSTSTNGGPNVT 298
>L23645-4|AAK26137.1| 867|Caenorhabditis elegans Zinc finger
protein protein 1,isoform a protein.
Length = 867
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 514 ELKRDVMATRNAVQFRGAAPRSEKACSSEKLPNVS 618
+ +RD +A R A + R AA +S+ + S+ PNV+
Sbjct: 496 DFQRDRVADRTAAERRAAAAQSQPSTSTNGGPNVT 530
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,561,198
Number of Sequences: 27780
Number of extensions: 334507
Number of successful extensions: 787
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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