Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29o23
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.1  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.1  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 583 KACSSEKLPNVSRKRFKNVLKEFVDAVVS 669
           K CS+EK        F+N L+   DAV++
Sbjct: 452 KFCSTEKRLTKQNTAFENQLQFVSDAVMA 480


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 377 PERSTAIVSPRNSCK 333
           P R T I+ PR  CK
Sbjct: 457 PVRETLILPPRKRCK 471


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
 Frame = +1

Query: 307 LTPFSEKKSLHEL-RGETIAVDLSGWVCDSQ---NVTEHHVQ-PKLYLRNLFFRTVYLLL 471
           L  F+E + L EL RG  +   +S    D     NV E ++   KLY  ++      L  
Sbjct: 258 LEQFAENEDLEELCRGCNLGHMISYDDTDGDGKLNVNEFYMAFSKLYSVSVVSLDKSL-- 315

Query: 472 AEINPIFVLEGDAPELKRDVMAT 540
            E+N I    GD  E+K DV  T
Sbjct: 316 -EVNHISARVGDNVEIKCDVTGT 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,532
Number of Sequences: 438
Number of extensions: 4501
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)