Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29o17
(734 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 28 1.6
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 27 3.7
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 26 4.8
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz... 26 4.8
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po... 26 4.8
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|... 26 6.4
SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|... 26 6.4
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 25 8.5
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces... 25 8.5
SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyce... 25 8.5
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 260 GGKIKGISGLKTPKRIGRKYERKDKKVER 346
G K+K GLK +++ +K + KK+ER
Sbjct: 411 GAKVKEEKGLKKDRKLPKKMRKAQKKLER 439
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 26.6 bits (56), Expect = 3.7
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 261 EAKLKEYRALRRRKELVENTKEKIRKSRDKIVNFLIPQVFLDMTKDR 401
E +E R +R ++ T KIRK+R + LIP+ D+ +R
Sbjct: 438 ELMFREERKAKRVAKIKSKTYRKIRKNRKEKEMALIPKSEEDLENER 484
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 573 SIIWLSLYMYFLQIQFGAVFFVVS-VLIGICVNT 671
+++ LSL Y L I FG +++S +++G VN+
Sbjct: 26 ALLVLSLIFYILYICFGTTSYILSGIILGAYVNS 59
>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 26.2 bits (55), Expect = 4.8
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -2
Query: 694 PRFLGVVLVLTQIPIKTDTTKNTAPNCICKKYMYKDNQI 578
P+FL LT I I TD T+ I Y+Y+D +I
Sbjct: 77 PKFLMANGDLTNILIYTDVTRYIEFKQIAGSYVYRDGRI 115
>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 451
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 228 KIFNSPISLR-MEAKLKEYRALRRRKELVENTKEKIRKSRDKIVNF 362
K F++P + M+ +YR + R +EL+ EKIR S NF
Sbjct: 320 KRFSNPHTKHIMDLVRTQYRNVLRTRELIPEFLEKIRSSYSNNQNF 365
>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
3|||Manual
Length = 368
Score = 25.8 bits (54), Expect = 6.4
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 531 KESWQYFAIKWSIGSIIWLSLYMYFLQIQFGAVFFVVSVLIGICV 665
K+ W YF + +I +I++SL+ YF + AV V + + C+
Sbjct: 134 KDEWVYFGVWCAICLMIFISLW-YFYETWIKAVKVTV-IFLAQCI 176
>SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +3
Query: 273 KEYRALRRRKELVE-NTKEKIRKSRDKIVN 359
+ + +R+ E +E N +K+RKS DK++N
Sbjct: 93 RTFLQIRKYLETIEENEFDKVRKSSDKLIN 122
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/49 (26%), Positives = 28/49 (57%)
Frame = +3
Query: 207 SR*EIKRKIFNSPISLRMEAKLKEYRALRRRKELVENTKEKIRKSRDKI 353
SR +I+++ + L + + KE + RRKE ++ +E+ ++ DK+
Sbjct: 507 SREQIQKQRQKAKTKLENQRRDKERQEELRRKEAMQKIEEQSKRDYDKL 555
>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 580
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +3
Query: 261 EAKLKEYRALRRRKELVENTKEKIRKSRDKIVNFLI 368
E K++EYR + + + ++E+ +RD I+N+L+
Sbjct: 325 ENKVQEYREITGNQLVHARSEEESLSARDIIMNYLL 360
>SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 115 KVSLKRRGLNKNINKNKYVI 56
K SL+ GL K +NKNK+ I
Sbjct: 12 KGSLRENGLVKGLNKNKFSI 31
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,470,651
Number of Sequences: 5004
Number of extensions: 43573
Number of successful extensions: 143
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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