Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29o17
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97006-2|AAC47962.2|  144|Caenorhabditis elegans Hypothetical pr...    40   0.001
Z68106-1|CAA92124.1|  516|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical p...    28   7.9  
Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>U97006-2|AAC47962.2|  144|Caenorhabditis elegans Hypothetical
           protein C13F10.5 protein.
          Length = 144

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 21/64 (32%), Positives = 38/64 (59%)
 Frame = +3

Query: 528 PKESWQYFAIKWSIGSIIWLSLYMYFLQIQFGAVFFVVSVLIGICVNTRTTPKKRGEVSA 707
           P++  +   +   I  ++++        +QFGAVFF++S+++    NT    ++RGE+SA
Sbjct: 58  PEDYEEQSVVSTRIAVVVYVVGQALAAWVQFGAVFFILSLILFTYWNTGR--RRRGEMSA 115

Query: 708 YSVF 719
           YSVF
Sbjct: 116 YSVF 119


>Z68106-1|CAA92124.1|  516|Caenorhabditis elegans Hypothetical
           protein F41E7.1 protein.
          Length = 516

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +2

Query: 476 PE*YNFRSK*TGILRR*AERILAIFCN*MVNRLYYLVIFV 595
           P   NF+ K  G L+R  E ILAI C   V+ L+ +++F+
Sbjct: 198 PAMINFKEKQLGSLKRIPENILAICC---VDNLFCVILFM 234


>Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical
           protein C28A5.6 protein.
          Length = 1061

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 284 GLKTPKRIGRKYERKDKKVER 346
           G K PK+ G+  ERK+K  ER
Sbjct: 810 GRKKPKKAGKSAERKEKSAER 830


>Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical
           protein C28A5.6 protein.
          Length = 1061

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 284 GLKTPKRIGRKYERKDKKVER 346
           G K PK+ G+  ERK+K  ER
Sbjct: 810 GRKKPKKAGKSAERKEKSAER 830


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,444,807
Number of Sequences: 27780
Number of extensions: 237953
Number of successful extensions: 738
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)