Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29o16
         (802 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1085 + 33989863-33991179                                         33   0.35 
06_01_1164 + 9921555-9922661                                           29   5.7  
04_04_0927 + 29467121-29467168,29467518-29467604,29468180-294682...    29   5.7  
11_06_0711 - 26508228-26508488,26508970-26509084,26509179-265094...    28   7.5  
05_01_0351 + 2750253-2751042,2751951-2751958,2752122-2752149,275...    28   7.5  
04_04_1098 + 30876785-30876835,30876846-30877171,30877396-308774...    28   7.5  
04_04_0057 + 22410167-22411330                                         28   7.5  
04_04_1107 - 30954647-30954769,30955052-30955141,30955309-309556...    28   9.9  

>02_05_1085 + 33989863-33991179
          Length = 438

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 13/120 (10%)
 Frame = +2

Query: 83  RSPLNIMELKY-WWWMMXXXXXXXXXXXXXDGEV-WEENDHEVLIRSARGAK-------- 232
           RSP  I+ LK+ WWWMM             DG + + E DH +   + R A+        
Sbjct: 208 RSP-RIVSLKHHWWWMMNTVWDGLDETRDFDGHILFIEEDHYIFPNAYRNAQLLVDLKPS 266

Query: 233 NREACRYVRGAWSECDSKTNIRSRKLTLKKGD---PANCEVVKTIQKKCKRTCRYEKSSW 403
               C  +  A S+  +K       +  K G+     N  V + I  K K+ C +++ +W
Sbjct: 267 KCPQCYAINLAPSDVKAKGEGWESLVAEKMGNIGYAFNRTVWRKIHAKAKQFCTFDEYNW 326


>06_01_1164 + 9921555-9922661
          Length = 368

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +3

Query: 339 VKLLKPSRKSARELAAMKSHLGANAASMGRCPGPIS*SPTAIRLATKVGAKLG 497
           +++  P R+  R +  ++ H+ A AAS G   G        +RL  +V A+ G
Sbjct: 279 LRVAGPVRRPLRRVRQLREHVAAAAASRGGAGGRAGAYRRGVRLGRRVVARSG 331


>04_04_0927 +
           29467121-29467168,29467518-29467604,29468180-29468269,
           29468547-29468741,29469056-29471080,29471208-29471354,
           29471520-29471923,29472015-29472144
          Length = 1041

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -1

Query: 244 CLSIFCASCASNENFMVILLPHLAICGNYRYR 149
           C S+FC+SC SN+  M  L P      N RYR
Sbjct: 635 CGSMFCSSCTSNKITMAALAPDT----NRRYR 662


>11_06_0711 -
           26508228-26508488,26508970-26509084,26509179-26509451,
           26509629-26510197,26510489-26510597,26511002-26511544,
           26511645-26511763,26511893-26512120,26512199-26512315,
           26512410-26512506,26513169-26513569
          Length = 943

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/61 (26%), Positives = 34/61 (55%)
 Frame = +2

Query: 278 DSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSN 457
           D + ++R R+L +     A  E ++T++  C +  +    + S CS+ G+M+R + + SN
Sbjct: 249 DERNSLR-RQLWIWIHPSALSEGLETLRAACHQQMQESGDTISCCSLEGKMARLEVMGSN 307

Query: 458 S 460
           +
Sbjct: 308 A 308


>05_01_0351 +
           2750253-2751042,2751951-2751958,2752122-2752149,
           2754692-2754775,2755780-2757548
          Length = 892

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -3

Query: 200 HGHSPPTPRHLRQLPLPIRGPVLP 129
           H H P  PRH   LPLP+  P  P
Sbjct: 747 HQHQPYQPRHTDALPLPLPLPPPP 770


>04_04_1098 +
           30876785-30876835,30876846-30877171,30877396-30877418,
           30877687-30879392
          Length = 701

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +2

Query: 350 KTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTR 496
           KT++   +   + +K   S+   +G+ SR  KL  +SDS  D +++K +
Sbjct: 214 KTLKDDRRHAKKGKKDKGSDAKSHGKSSRKIKLGHDSDSDHDDNKKKKK 262


>04_04_0057 + 22410167-22411330
          Length = 387

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = +3

Query: 399 LGANAASMGRCPGPIS*SPTAIRLATKVGAKLGNVTRISKSSLLKIRYFC 548
           +GA A S    P P +     +R  T  G  +  V  +S S    + +FC
Sbjct: 18  VGAGAQSSSASPAPATSQAPTVRQQTPFGRTMSTVITVSISVFFFLLFFC 67


>04_04_1107 -
           30954647-30954769,30955052-30955141,30955309-30955617,
           30955732-30955842,30955945-30956379,30956452-30956610,
           30957044-30957994,30959016-30959483
          Length = 881

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 188 PPTPRHLRQLPLPIRGP 138
           PP PR  R LP+P RGP
Sbjct: 50  PPPPRPRRALPIPGRGP 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,577,344
Number of Sequences: 37544
Number of extensions: 393386
Number of successful extensions: 1188
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1188
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)