Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29o16
(802 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z32683-4|CAA83629.1| 443|Caenorhabditis elegans Hypothetical pr... 32 0.55
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 31 0.96
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 31 0.96
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr... 30 1.7
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein. 30 1.7
Z81086-3|CAD56586.1| 711|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z75552-9|CAA99945.2| 705|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z75551-6|CAA99937.2| 705|Caenorhabditis elegans Hypothetical pr... 29 3.9
AL110500-21|CAI79283.1| 197|Caenorhabditis elegans Hypothetical... 29 5.1
Z99710-12|CAI79158.1| 333|Caenorhabditis elegans Hypothetical p... 28 6.8
AL034393-28|CAI79175.1| 333|Caenorhabditis elegans Hypothetical... 28 6.8
AF273836-1|AAG15184.1| 362|Caenorhabditis elegans nuclear recep... 28 6.8
AC024776-15|AAK68482.2| 354|Caenorhabditis elegans Nuclear horm... 28 6.8
U93847-1|AAB58269.1| 760|Caenorhabditis elegans elongation fact... 28 8.9
U93846-1|AAB58268.1| 768|Caenorhabditis elegans elongation fact... 28 8.9
U10414-7|AAN63383.1| 768|Caenorhabditis elegans Elongation fact... 28 8.9
U10414-6|AAN63384.1| 760|Caenorhabditis elegans Elongation fact... 28 8.9
AC006712-10|AAK39322.2| 273|Caenorhabditis elegans Hypothetical... 28 8.9
>Z32683-4|CAA83629.1| 443|Caenorhabditis elegans Hypothetical
protein R07E5.6 protein.
Length = 443
Score = 31.9 bits (69), Expect = 0.55
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 350 KTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTC-DQSRRKTRKCNKNKQV 520
K ++K KR +K+ + SIN EMSR DK + +C D+ + +K K + V
Sbjct: 285 KKKEEKEKRRKEVKKNREEQLSINPEMSRNDKKDVVEEKSCLDKGAKDAQKKKKQQDV 342
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
F25H8.3 protein.
Length = 2165
Score = 31.1 bits (67), Expect = 0.96
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Frame = +2
Query: 233 NREACRYVR-GAWSECDSK----TNIRSRKLTLKKGD--PAN-C-EVVKTIQKKCKR-TC 382
N AC + + G WS+C +K R T + P + C ++ K I K C R +C
Sbjct: 1125 NEHACTWWQFGVWSDCSAKCGDGVQYRDANCTDRHRSVLPEHRCLKMEKIITKPCHRESC 1184
Query: 383 -RYEKSSWSECSINGE 427
+Y+ WS+CS++ E
Sbjct: 1185 PKYKLGEWSQCSVSCE 1200
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 31.1 bits (67), Expect = 0.96
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Frame = +2
Query: 233 NREACRYVR-GAWSECDSK----TNIRSRKLTLKKGD--PAN-C-EVVKTIQKKCKR-TC 382
N AC + + G WS+C +K R T + P + C ++ K I K C R +C
Sbjct: 1125 NEHACTWWQFGVWSDCSAKCGDGVQYRDANCTDRHRSVLPEHRCLKMEKIITKPCHRESC 1184
Query: 383 -RYEKSSWSECSINGE 427
+Y+ WS+CS++ E
Sbjct: 1185 PKYKLGEWSQCSVSCE 1200
>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical protein
C02B4.1 protein.
Length = 1461
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +2
Query: 395 SSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTRKCNKNKQVKL 526
S W CS+ R + + +++C + +T +CN N ++L
Sbjct: 1042 SEWGPCSVTCGSGRRVRTRGCQEASCPEQHIQTEECNLNSCLEL 1085
>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical protein
C02B4.1 protein.
Length = 1461
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +2
Query: 395 SSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTRKCNKNKQVKL 526
S W CS+ R + + +++C + +T +CN N ++L
Sbjct: 1042 SEWGPCSVTCGSGRRVRTRGCQEASCPEQHIQTEECNLNSCLEL 1085
>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
Length = 1461
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +2
Query: 395 SSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTRKCNKNKQVKL 526
S W CS+ R + + +++C + +T +CN N ++L
Sbjct: 1042 SEWGPCSVTCGSGRRVRTRGCQEASCPEQHIQTEECNLNSCLEL 1085
>Z81086-3|CAD56586.1| 711|Caenorhabditis elegans Hypothetical
protein F53B6.2b protein.
Length = 711
Score = 29.9 bits (64), Expect = 2.2
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 18/79 (22%)
Frame = +2
Query: 233 NREACRYVRGAWSECDSKT----NIRSRKLTLK---KGDPAN-----CEVVKTIQKKCKR 376
N R+ G WSEC KT ++R ++ K G+ N CE + +++ R
Sbjct: 472 NELVARWDIGHWSECRQKTCHVAGYQARGISCKVTFHGEIRNVDNSICESLASVRPPETR 531
Query: 377 TC------RYEKSSWSECS 415
C R+E S WSECS
Sbjct: 532 PCHREDCPRWEASQWSECS 550
>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical protein
F53B6.2a protein.
Length = 1045
Score = 29.9 bits (64), Expect = 2.2
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 18/79 (22%)
Frame = +2
Query: 233 NREACRYVRGAWSECDSKT----NIRSRKLTLK---KGDPAN-----CEVVKTIQKKCKR 376
N R+ G WSEC KT ++R ++ K G+ N CE + +++ R
Sbjct: 806 NELVARWDIGHWSECRQKTCHVAGYQARGISCKVTFHGEIRNVDNSICESLASVRPPETR 865
Query: 377 TC------RYEKSSWSECS 415
C R+E S WSECS
Sbjct: 866 PCHREDCPRWEASQWSECS 884
>Z75552-9|CAA99945.2| 705|Caenorhabditis elegans Hypothetical
protein W04D2.6a protein.
Length = 705
Score = 29.1 bits (62), Expect = 3.9
Identities = 25/104 (24%), Positives = 44/104 (42%)
Frame = +2
Query: 182 WEENDHEVLIRSARGAKNREACRYVRGAWSECDSKTNIRSRKLTLKKGDPANCEVVKTIQ 361
W E DH+ L + + + V+G S+ + +T + S KK D + +
Sbjct: 172 WMETDHKELFSITEDGELSDETKKVKGHDSKIEKQT-VPSSSSNPKK-DEHKRNRNRRSR 229
Query: 362 KKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRRKT 493
+ + R + S S+ S + SR + SNS S D S ++
Sbjct: 230 SRTRSRERTSRRSRSKESPRSKRSRRSRSSSNSSSESDSSSSRS 273
>Z75551-6|CAA99937.2| 705|Caenorhabditis elegans Hypothetical
protein W04D2.6a protein.
Length = 705
Score = 29.1 bits (62), Expect = 3.9
Identities = 25/104 (24%), Positives = 44/104 (42%)
Frame = +2
Query: 182 WEENDHEVLIRSARGAKNREACRYVRGAWSECDSKTNIRSRKLTLKKGDPANCEVVKTIQ 361
W E DH+ L + + + V+G S+ + +T + S KK D + +
Sbjct: 172 WMETDHKELFSITEDGELSDETKKVKGHDSKIEKQT-VPSSSSNPKK-DEHKRNRNRRSR 229
Query: 362 KKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRRKT 493
+ + R + S S+ S + SR + SNS S D S ++
Sbjct: 230 SRTRSRERTSRRSRSKESPRSKRSRRSRSSSNSSSESDSSSSRS 273
>AL110500-21|CAI79283.1| 197|Caenorhabditis elegans Hypothetical
protein Y87G2A.20 protein.
Length = 197
Score = 28.7 bits (61), Expect = 5.1
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = +2
Query: 317 KKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTR 496
KKG AN KT K KR + +K W++ + R K+ + D ++RK +
Sbjct: 24 KKGGKAN----KTKTKATKRKAQMKKK-WTKTAQKKRKERKKADKAKKKTKKDAAKRKKK 78
Query: 497 KCNKNKQVKLAK 532
+K K+ K K
Sbjct: 79 SKDKKKKQKAQK 90
>Z99710-12|CAI79158.1| 333|Caenorhabditis elegans Hypothetical
protein Y18D10A.22 protein.
Length = 333
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -2
Query: 363 FWMVLTTSQLAGSPFFRVNFLERIFVL--ESHSLQAPRTYRHASLF 232
FW +L + QL P F + L E HS TYRH + F
Sbjct: 45 FWNLLESIQLEKHPVMTWKFCNLVHKLLQEGHSTVPQETYRHLNRF 90
>AL034393-28|CAI79175.1| 333|Caenorhabditis elegans Hypothetical
protein Y18D10A.22 protein.
Length = 333
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -2
Query: 363 FWMVLTTSQLAGSPFFRVNFLERIFVL--ESHSLQAPRTYRHASLF 232
FW +L + QL P F + L E HS TYRH + F
Sbjct: 45 FWNLLESIQLEKHPVMTWKFCNLVHKLLQEGHSTVPQETYRHLNRF 90
>AF273836-1|AAG15184.1| 362|Caenorhabditis elegans nuclear receptor
NHR-92 protein.
Length = 362
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 284 KTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEK 394
+T +R + K+ + NC +V TI+ CK+ CRY K
Sbjct: 39 RTVVRGHEYRCKQME--NCLIVSTIRNMCKK-CRYTK 72
>AC024776-15|AAK68482.2| 354|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 92 protein.
Length = 354
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 284 KTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEK 394
+T +R + K+ + NC +V TI+ CK+ CRY K
Sbjct: 31 RTVVRGHEYRCKQME--NCLIVSTIRNMCKK-CRYTK 64
>U93847-1|AAB58269.1| 760|Caenorhabditis elegans elongation
factor-2 kinase EFK-1B isoform protein.
Length = 760
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 329 PANCEVVKTIQKKCKRTCRYEKSSW--SECSINGEMSRTDKLKSNSDSTCDQSRRKTRKC 502
P VV+ + + C E+ + SE S N + SR ++ ++ S+ D+S + RKC
Sbjct: 388 PECIPVVEQLCEPCSEDEEDEEEDYPRSEKSGNSQKSRRSRMSISTRSSGDESASRPRKC 447
>U93846-1|AAB58268.1| 768|Caenorhabditis elegans elongation
factor-2 kinase EFK-1A isoform protein.
Length = 768
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 329 PANCEVVKTIQKKCKRTCRYEKSSW--SECSINGEMSRTDKLKSNSDSTCDQSRRKTRKC 502
P VV+ + + C E+ + SE S N + SR ++ ++ S+ D+S + RKC
Sbjct: 388 PECIPVVEQLCEPCSEDEEDEEEDYPRSEKSGNSQKSRRSRMSISTRSSGDESASRPRKC 447
>U10414-7|AAN63383.1| 768|Caenorhabditis elegans Elongation factor
kinase protein1, isoform a protein.
Length = 768
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 329 PANCEVVKTIQKKCKRTCRYEKSSW--SECSINGEMSRTDKLKSNSDSTCDQSRRKTRKC 502
P VV+ + + C E+ + SE S N + SR ++ ++ S+ D+S + RKC
Sbjct: 388 PECIPVVEQLCEPCSEDEEDEEEDYPRSEKSGNSQKSRRSRMSISTRSSGDESASRPRKC 447
>U10414-6|AAN63384.1| 760|Caenorhabditis elegans Elongation factor
kinase protein1, isoform b protein.
Length = 760
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 329 PANCEVVKTIQKKCKRTCRYEKSSW--SECSINGEMSRTDKLKSNSDSTCDQSRRKTRKC 502
P VV+ + + C E+ + SE S N + SR ++ ++ S+ D+S + RKC
Sbjct: 388 PECIPVVEQLCEPCSEDEEDEEEDYPRSEKSGNSQKSRRSRMSISTRSSGDESASRPRKC 447
>AC006712-10|AAK39322.2| 273|Caenorhabditis elegans Hypothetical
protein Y119C1B.1 protein.
Length = 273
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = +2
Query: 317 KKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTR 496
K P N + ++ K K T + +K S+ + + K+KS+ D SR+ T+
Sbjct: 189 KPSKPENDKSYYSVPSKDKSTSKKQKMLRSDMADSASPKSLKKIKSSKDPLRSSSRKTTK 248
Query: 497 KCNK 508
K
Sbjct: 249 PSKK 252
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,793,153
Number of Sequences: 27780
Number of extensions: 340099
Number of successful extensions: 982
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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