Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29o13
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    27   2.3  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    27   2.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   4.0  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    26   5.3  
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo...    25   9.2  

>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = +2

Query: 599 SDNFRVVARSTNEKKKVETVA*LNRNK 679
           SD+  V  RST+EK+KVE+V  ++ +K
Sbjct: 49  SDSKNVDGRSTSEKRKVESVKLVDESK 75


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 429 SADFQGTRAMEGTDRDIRAAVPVTRATNLDTTNTD-PVSTGTP 554
           S DF+ T  M G + D+    P     NL+ T TD P+S   P
Sbjct: 425 SKDFKETEDMNGAE-DMHGRAPQITKDNLNLTTTDSPMSEAEP 466


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 734  STNYGVFYKDLIDNLKNVSYFY*VKL 657
            S  YG+F+   +D L+  +YF+  KL
Sbjct: 997  SATYGLFFATTVDELREEAYFWLEKL 1022


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 524 QYRSSFDRYPATNAGNFFGGYGDGYSDNFR 613
           Q  S FD+Y +      + GY  G+SDNFR
Sbjct: 459 QQASDFDQYVS-----LYSGYLQGFSDNFR 483


>SPAC24C9.12c |||glycine hydroxymethyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 695 CRLSPYKKHRSLC*SINGYCILD 763
           CRL  Y + R +  S+N Y ++D
Sbjct: 192 CRLIDYARMRQIADSVNAYLVVD 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,123,168
Number of Sequences: 5004
Number of extensions: 35410
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)