Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29o01
(748 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism... 139 4e-34
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy... 131 1e-31
SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde reduc... 103 3e-23
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc... 90 3e-19
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc... 90 3e-19
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy... 79 9e-16
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo... 61 2e-10
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom... 39 9e-04
SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch... 36 0.008
SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces po... 31 0.13
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 29 0.53
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar... 28 1.2
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 28 1.6
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 27 2.1
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 27 2.1
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 27 2.8
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 2.8
SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor |Schizo... 27 2.8
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 27 2.8
SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces po... 26 5.0
SPAC3C7.14c |obr1|apt1, uhp1|ubiquitinated histone-like protein ... 26 6.6
>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 139 bits (336), Expect = 4e-34
Identities = 80/215 (37%), Positives = 122/215 (56%), Gaps = 10/215 (4%)
Frame = +2
Query: 95 LSSGGNIPVVALGTWLGHRPKGKVVQVTNDTEQAVIYALEAGYTHIDTAYKYGIEDQVGR 274
L +G IP + LGTW GK ++T+ AV AL+AGY HIDTA+ YG E ++G
Sbjct: 17 LPNGDKIPSIGLGTWRS----GK-----DETKNAVCAALKAGYRHIDTAHIYGNEKEIGE 67
Query: 275 ALTKKFSEGLKRESIFITTKLWNSYHEREQVIPALRKSLENLNLEYVDLYLIHWPIAMF- 451
+ + G+ R I++T+KLW + H V AL K+L++LNLEY+D YLIHWP A+
Sbjct: 68 GIRES---GVPRTDIWVTSKLWCNAHRAGLVPLALEKTLQDLNLEYIDAYLIHWPFALLS 124
Query: 452 ---------ENDTLLDNVDFLDTWRGMIDAKKLGLTKSIGISNFNQEQIQRIIDSGLEKP 604
+ + + ++V +TW+ M + + G + IGISNFN E + R++ KP
Sbjct: 125 GPEELPRNEKGELIYEDVPIEETWQAMEELLETGKVRYIGISNFNNEYLDRVLKIAKVKP 184
Query: 605 SALQIELNLNLQQPELFKFCRENDIVVMAYTPFGS 709
+ Q+EL+ L Q E + ++ I V AY+P +
Sbjct: 185 TIHQMELHPYLPQTEYLEKHKKLQIHVSAYSPLAN 219
>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 321
Score = 131 bits (316), Expect = 1e-31
Identities = 79/215 (36%), Positives = 117/215 (54%), Gaps = 10/215 (4%)
Frame = +2
Query: 95 LSSGGNIPVVALGTWLGHRPKGKVVQVTNDTEQAVIYALEAGYTHIDTAYKYGIEDQVGR 274
L+ G IP + LGTW N T+ AV AL+ GY HID A YG ED+VG
Sbjct: 18 LADGSKIPGLGLGTWRSE---------PNQTKNAVKTALQYGYRHIDAAAIYGNEDEVGD 68
Query: 275 ALTKKFSEGLKRESIFITTKLWNSYHEREQVIPALRKSLENLNLEYVDLYLIHWPIAM-- 448
+ + G+ R+ I++T+KLW + H E V AL K+L++L L+Y+D YLIHWP++
Sbjct: 69 GIKES---GVPRKDIWVTSKLWCNAHAPEAVPKALEKTLKDLKLDYLDEYLIHWPVSFKT 125
Query: 449 ----FEND----TLLDNVDFLDTWRGMIDAKKLGLTKSIGISNFNQEQIQRIIDSGLEKP 604
F D + + +TW+ M + G + IG+SNFN ++RI+ KP
Sbjct: 126 GEDKFPKDKDGNLIYEKNPIEETWKAMEKLLETGKVRHIGLSNFNDTNLERILKVAKVKP 185
Query: 605 SALQIELNLNLQQPELFKFCRENDIVVMAYTPFGS 709
+ Q+EL+ L Q E + ++ I V AY+PFG+
Sbjct: 186 AVHQMELHPFLPQTEFVEKHKKLGIHVTAYSPFGN 220
>SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde
reductase AKR3C2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 284
Score = 103 bits (247), Expect = 3e-23
Identities = 67/211 (31%), Positives = 105/211 (49%), Gaps = 2/211 (0%)
Frame = +2
Query: 113 IPVVALGTWLGHRPKGKVVQVTNDTEQAVIYALEAGYTHIDTAYKYGIEDQVGRALTKKF 292
+P +GT L + KG++ + D+ V AL AG+ HID A YG E++VG AL +
Sbjct: 12 VPAYGVGTALFKKEKGEINRTIVDS---VKNALAAGFIHIDCAEVYGNEEEVGVALKEA- 67
Query: 293 SEGLKRESIFITTKLWNSYHEREQVIPALRKSLENLNLEYVDLYLIHWPIAMFENDTLLD 472
+ R +FIT+K+ H + + AL +SL L +Y+DLYL+H PI +E
Sbjct: 68 --NVPRSKLFITSKVM---HNVDNIPEALNESLRKLGTDYLDLYLLHSPIPFYEK----- 117
Query: 473 NVDFLDTWRGMIDAKKLGLTKSIGISNFNQEQIQRIIDSGLEKPSALQIELNLNLQQ--P 646
+ + W+ M A GL S+G+SNF ++ ++ + P QIE + + +
Sbjct: 118 KIPISEGWKAMETALGTGLVHSVGVSNFRIPDLEELLKTSTITPRVNQIEFHPQVYKAAK 177
Query: 647 ELFKFCRENDIVVMAYTPFGSLFPSKAQPDA 739
L +FC+ I+V Y P L P A
Sbjct: 178 PLVEFCQSKGIIVEGYGPLSPLVRDAQGPVA 208
>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 275
Score = 90.2 bits (214), Expect = 3e-19
Identities = 66/216 (30%), Positives = 107/216 (49%), Gaps = 4/216 (1%)
Frame = +2
Query: 89 LQLSSGGNIPVVALGTWLGHRPKGKVVQVTNDTEQAVIYALEAGYTHIDTAYKYGIEDQV 268
++L++G P A G+++ +R K +V AL+ GY HID+A Y E
Sbjct: 6 VKLNNGLKCPQFAYGSYMVNRTK---------CFDSVYAALQCGYRHIDSAQMYHNEADC 56
Query: 269 GRALTKKFSE-GLKRESIFITTKLWNSYHEREQVIPALRKSLENLNLEYVDLYLIHWPIA 445
GRA+ K E G KRE I+ T+KL N + + ++ S++ L Y+DL+L+H P
Sbjct: 57 GRAILKFMEETGTKREDIWFTSKL-NDLSGYKSTLSSIDASVKACGLGYIDLFLLHSPYG 115
Query: 446 MFENDTLLDNVDFLDTWRGMIDAKKLGLTKSIGISNFNQEQIQRIIDSGLE-KPSALQIE 622
D +++W+ + + G ++IG+SNF IQ ++DS + P QIE
Sbjct: 116 -----------DRIESWKALEKGVEEGKLRAIGVSNFGPHHIQELLDSHPKIIPCVNQIE 164
Query: 623 LNLNLQQPELFKFCRENDIVVMAYTPF--GSLFPSK 724
L+ Q ++ +C I + AY P G F +K
Sbjct: 165 LHPFCSQQKVVDYCESKGIQLAAYAPLVHGEKFGNK 200
>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 90.2 bits (214), Expect = 3e-19
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 2/176 (1%)
Frame = +2
Query: 179 NDTEQAVIYALEAGYTHIDTAYKYGIEDQVGRALTKKFSE-GLKRESIFITTKLWNSYHE 355
N+ V AL++GY HIDTA YG ED G+A+ + +KR IF+T+KL N +
Sbjct: 32 NECYGLVTQALDSGYRHIDTAAVYGNEDICGKAIVDWCEKNNVKRTDIFLTSKLANC-SD 90
Query: 356 REQVIPALRKSLENLNLEYVDLYLIHWPIAMFENDTLLDNVDFLDTWRGMIDAKKLGLTK 535
A+R SL +L Y+DL+LI P + +W+ M + G +
Sbjct: 91 YYSTRAAIRSSLHHLG-TYIDLFLIQSPAG--------GKKSRIASWKAMEEFVDSGDIR 141
Query: 536 SIGISNFNQEQIQRIIDSGLE-KPSALQIELNLNLQQPELFKFCRENDIVVMAYTP 700
S+G+SN+ + +Q + S + P QIEL+ L Q ++ K+C+ +DI + AY+P
Sbjct: 142 SVGVSNYGVKHLQELYASNPKFYPCVNQIELHPFLSQDDIVKYCQSHDIAIEAYSP 197
>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 276
Score = 78.6 bits (185), Expect = 9e-16
Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 5/178 (2%)
Frame = +2
Query: 182 DTEQAVIYALEAGYTHIDTAYKYGIEDQVGRALTKKFSEG--LKRESIFITTKLWNSYHE 355
D Q VI AL G ID+A Y E + +A+ + +KRE I + TK+ +S
Sbjct: 25 DCYQQVIEALSLGIRVIDSAITYRNEKECEQAIQDFCHQNVNIKREDITLITKIPDSLQG 84
Query: 356 REQVIPALRKSLENLNLEYVDLYLIH---WPIAMFENDTLLDNVDFLDTWRGMIDAKKLG 526
E+ A+ +SL +D+ LIH WP+ E+ WR ++ +K G
Sbjct: 85 FERTWKAVEQSLRRTGRPKLDVVLIHSPKWPVRRIES------------WRALLQHQKEG 132
Query: 527 LTKSIGISNFNQEQIQRIIDSGLEKPSALQIELNLNLQQPELFKFCRENDIVVMAYTP 700
IG+SN+N ++ II GL P+ Q+E + +P +C + I+V A++P
Sbjct: 133 RINKIGVSNYNIHHLEEIISLGLPLPAINQVEFSAFNNRPTFLSYCFNHGILVQAFSP 190
>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
YakC|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 60.9 bits (141), Expect = 2e-10
Identities = 65/243 (26%), Positives = 118/243 (48%), Gaps = 21/243 (8%)
Frame = +2
Query: 80 VPTLQLSSGGNIPVVALGTWLGHRPKGKVVQVTNDTEQAVI-YALEAGYTHIDTAYKYGI 256
+PT ++ + +P + G H G + N QAV+ +A + G T D++ YG
Sbjct: 3 IPTRKIGND-TVPAIGFGCMGLHAMYGPSSEEAN---QAVLTHAADLGCTFWDSSDMYGF 58
Query: 257 ---EDQVGRALTKKFSEGLKRESIFITTKLW----------NSYHEREQVIPALRKSLEN 397
E+ +GR F + +R+ IF+ TK + +E + + AL SL+
Sbjct: 59 GANEECIGRW----FKQTGRRKEIFLATKFGYEKNPETGELSLNNEPDYIEKALDLSLKR 114
Query: 398 LNLEYVDLYLIHWPIAMFENDTLLDNVDFLDTWRGMIDAKKLGLTKSIGISNFNQEQIQR 577
L ++ +DLY +H F +T ++ + + + ++A K+ + IG+S + I+R
Sbjct: 115 LGIDCIDLYYVH----RFSGETPIEKI--MGALKKCVEAGKI---RYIGLSECSANTIRR 165
Query: 578 IIDSGLEKPSALQIE---LNLNLQQPEL--FKFCRENDIVVMAYTPFGSLFPSKA--QPD 736
+ + SA+Q+E +L +++PE+ K CREN+I ++ Y P G F + A PD
Sbjct: 166 A--AAVYPVSAVQVEYSPFSLEIERPEIGVMKACRENNITIVCYAPLGRGFLTGAYKSPD 223
Query: 737 APP 745
P
Sbjct: 224 DFP 226
>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 38.7 bits (86), Expect = 9e-04
Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
Frame = +2
Query: 101 SGGNIPVVALGTWLGHRPKGKVVQVTNDTEQAVIYALEAGYTHIDTA--YKYGIEDQV-G 271
SG + +LG WL + +G V+ T+ + A + G DTA Y G + V G
Sbjct: 21 SGLKVSAFSLGGWLTYGNEGYDVE---HTKNCLKQAWDLGINTFDTAEIYSNGNSETVMG 77
Query: 272 RALTK---KFSEGLKRESIFIT--TKLWNSYH-EREQVIPALRKSLENLNLEYVDLYLIH 433
+A+ + SE + +F TKL N+ R+ +I L SL+ L L YVD+ + H
Sbjct: 78 KAIKELGWDRSEYVITTKVFFGAGTKLPNTTGLSRKHIIEGLNASLKRLGLPYVDVIMAH 137
Query: 434 WP 439
P
Sbjct: 138 RP 139
>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 287
Score = 35.5 bits (78), Expect = 0.008
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +2
Query: 482 FLDTWRGMIDAKKLGLTKSIGISNFNQEQIQRIIDSGLEKPSALQIELNLNLQQP-ELFK 658
++DTW+ + + G ++G+S F ++QR+I S P + QI + N + P +L
Sbjct: 158 WVDTWKLLEEKVGEGKIGTLGVSEFGVNELQRLISSVNVVPESTQINIGQNCKLPNDLLN 217
Query: 659 F 661
F
Sbjct: 218 F 218
>SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 333
Score = 31.5 bits (68), Expect = 0.13
Identities = 19/76 (25%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Frame = +2
Query: 485 LDTWRGMIDAKKLGLTKSIGISNFNQEQIQRIIDSGLEKPSALQIELNL---NLQQPELF 655
+ T +G +D+ K+ +G+S + E I+R + +A+++E +L +++ +
Sbjct: 135 MKTLKGFVDSGKISC---VGLSEVSAETIKRA--HAVVPIAAVEVEYSLFSRDIETNGIM 189
Query: 656 KFCRENDIVVMAYTPF 703
CR+ I ++AY+PF
Sbjct: 190 DICRKLSIPIIAYSPF 205
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 29.5 bits (63), Expect = 0.53
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +2
Query: 482 FLDTWRGMIDAKKLGLTKSIGISNFNQEQIQRIIDSGLEKPSALQIEL 625
F+ T+ G + ++ G + Q+Q+QR++ S E+P A Q+ L
Sbjct: 364 FIQTYLGPSNNRRRGRRSENPMQKL-QQQLQRLVSSAKERPKATQLSL 410
>SPAC17G8.13c |mst2||histone acetyltransferase
Mst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 28.3 bits (60), Expect = 1.2
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +2
Query: 278 LTKKFSEGLKRESIFITTKLWNSYHEREQVIPALRKSLENLNLEYVDLYLIHWPIAM-FE 454
L KK+ LKR+ + K WN H ++V P L + L E + L+ I +
Sbjct: 335 LKKKYVLQLKRDELENVYKAWNIKHP-QRVNPKLLRWTPYLGEEQISNLLLKENILIPLP 393
Query: 455 NDTLLDNVDFLDT 493
LLDN LD+
Sbjct: 394 QKRLLDNSHHLDS 406
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +2
Query: 278 LTKKFSEGLKRESIFITTKLWNSYHEREQVIPALRKSLENLNLEYVDLYLIH 433
L +K + LK+ IF T L ++ ++P + K + NLN + D Y IH
Sbjct: 77 LCRKLASTLKQRVIFFTRVLL-TFFCWTVLLPLIFKHVWNLNFKIGDTYTIH 127
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 27.5 bits (58), Expect = 2.1
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Frame = +2
Query: 416 DLYLIHWPIAMFENDTLLDNVDFLDTWRGMID--AKKLGLTKSIGI--SNFNQEQIQRII 583
+LY+ H + F +L+N++ LD MI + GL + + SN Q I
Sbjct: 219 ELYVSHNGLTSFSGIEVLENLEILDVSNNMIKHLSYLAGLKNLVELWASNNELSSFQEIE 278
Query: 584 D--SGLEKPSALQIELN-LNLQQPELFK 658
D SGL+K + E N L P +++
Sbjct: 279 DELSGLKKLETVYFEGNPLQKTNPAVYR 306
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 534 LVRPSFLASIIPRHVSRKSTLSSKVSFSNI 445
L+ PSF A I RHV + T S+ V N+
Sbjct: 698 LIEPSFTAKIFARHVLLEKTKSTLVVKKNV 727
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 596 EKPSALQIELNLNLQQPELFKFCRENDI 679
EKP ++ L N+Q E+ + R+ND+
Sbjct: 852 EKPDTTKVPLKYNIQHEEMKAYRRKNDL 879
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 27.1 bits (57), Expect = 2.8
Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Frame = +2
Query: 356 REQVIPALRKSLENLNLEYVDLYLIHWPIAMFENDTLLDNVDFLDTWRG-MIDAKKLG-L 529
R ++ R+ +NL+ VD + A+ N + + ++T R +A KL +
Sbjct: 115 RVDILEVARQFEMRINLDIVDSMIAS---AIENNKVATEILPPVETLRSRQFEASKLREI 171
Query: 530 TKSIGISNFNQEQIQRIIDSGLEKPSALQIELNLNLQQPELFKFCRE 670
K+I + QE+I+ I S L+ + L + N + F++C +
Sbjct: 172 RKNIDSGFYTQEEIEVIARSMLDDVAELSSDYLGNTVVQKFFEYCSD 218
>SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 512
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +2
Query: 179 NDTEQAVIYALEAGYTHIDTAYKYGIEDQVGRALTKKFSEGL 304
N+ E +Y + A H+ AY+ I Q+G +T+ E +
Sbjct: 244 NEKEAYRLYKMAADLNHVQAAYRVAICLQMGFGVTQNTEEAI 285
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/50 (24%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +2
Query: 350 HEREQVIPALRKSLENLNLEYVDLYLIHWP--IAMFENDTLLDNVDFLDT 493
H+++++I + + N NLE+V L +H I + ++L +N +++ +
Sbjct: 482 HKKQRLIKQITNIMHNFNLEFVTLSYLHSKGIITTSQLESLRNNTEWISS 531
>SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 418
Score = 26.2 bits (55), Expect = 5.0
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +2
Query: 179 NDTEQAVIYA---LEAGYTHIDTAYKYGIEDQVG 271
NDT A+ A LEAG THIDT+ GI ++ G
Sbjct: 227 NDTGMAIANAYCALEAGATHIDTSI-LGIGERNG 259
>SPAC3C7.14c |obr1|apt1, uhp1|ubiquitinated histone-like protein
Uhp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 202
Score = 25.8 bits (54), Expect = 6.6
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 176 TNDTEQAVIYALEAGYTHIDTAYKYGIEDQVGRALTKKFSEGLKRE 313
T +T VIY+ + A K GIE G+A+ +F E L E
Sbjct: 3 TANTVAIVIYSTYGHVVKLAEAEKAGIEKAGGKAVIYQFPETLSPE 48
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,278,224
Number of Sequences: 5004
Number of extensions: 72354
Number of successful extensions: 266
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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