Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29o01
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    30   0.020
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    30   0.020
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    27   0.25 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    25   0.75 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.7  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   5.3  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   5.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.3  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 30.3 bits (65), Expect = 0.020
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 187 RASCHIRVGSWIHTHRHRVQIWNRGPSGKGPDQEI 291
           R  CHI + S+ +T R     WN GP+  G   E+
Sbjct: 149 RQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEV 183


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 30.3 bits (65), Expect = 0.020
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 187 RASCHIRVGSWIHTHRHRVQIWNRGPSGKGPDQEI 291
           R  CHI + S+ +T R     WN GP+  G   E+
Sbjct: 88  RQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEV 122


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 264 WSSIPYLYAVSMCVYPASNAYMTACSVSLVT*TTFPLGR 148
           WS  PY++  + C+   S A  T+ + +++T T F + R
Sbjct: 115 WSHFPYVFGEAFCII-QSFAAETSANATVLTITAFTVER 152


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 187 RASCHIRVGSWIHTHRHRVQIWNRGPSGKGPDQEI 291
           R  CHI + S+ +T R     WN G    G   E+
Sbjct: 149 RQLCHIEIESFGYTMRDIRYKWNAGLQSVGISNEV 183


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 182 DTEQAVIYALEAGYTHIDTAYKYGIEDQVGRALTKKFSE 298
           DT++  +     GYT  D  YK+    QV  A   K S+
Sbjct: 140 DTQRCPLQFGSFGYTKRDVIYKWNSARQVAIAEDMKLSQ 178


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 196 CHIRVGSWIHT 228
           C I  GSW+H+
Sbjct: 183 CRINFGSWVHS 193


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 515 KKLGLTKSIGISNFNQEQIQRIIDSGLEKP 604
           K  GLTK++ I N+N +  + I+ S    P
Sbjct: 94  KLYGLTKNLEIKNYNIDWDKCILSSESYNP 123


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 541 RHLQL*PRTNPEDHRQRTGETFGFADRVKPQPATTR 648
           RH+++    N ++  QR    FG  D  + +P T +
Sbjct: 209 RHMEVIKIKNFDNCDQRINYHFGMTDNSRLEPGTNK 244


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,358
Number of Sequences: 438
Number of extensions: 5098
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)