Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29n23
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0936 - 32875479-32875573,32875794-32876028,32877752-328778...    29   5.3  
01_01_0507 - 3704314-3704449,3705038-3705094,3705219-3705297,370...    28   7.0  

>02_05_0936 -
           32875479-32875573,32875794-32876028,32877752-32877848,
           32878863-32878927,32879506-32879571,32879735-32879842,
           32880169-32880303,32880582-32880647,32881172-32881222,
           32881312-32881386,32881834-32881896,32882694-32882783,
           32882903-32883100,32883189-32883315,32883482-32884100,
           32884228-32884265,32884651-32884718,32885056-32885100,
           32885243-32885302,32885510-32885593,32885677-32885868,
           32887361-32887663
          Length = 959

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = -2

Query: 621 ILVPVLLNNVINKCPAIMLAVNRTAKVPGRIIFLMVSIITINGIKI*GVP 472
           +L+PVL N++++   A +  +N+T+ V  R++  +V     N IK   VP
Sbjct: 651 LLIPVLPNDMMDFLDAPVPYINKTSDVHSRLVNAVVIDANKNQIKSTSVP 700


>01_01_0507 -
           3704314-3704449,3705038-3705094,3705219-3705297,
           3705380-3705486,3705833-3705949,3706077-3706165,
           3706668-3706721,3706800-3706866,3706971-3707128,
           3707318-3707386,3707481-3707618,3707706-3707740,
           3707829-3707952
          Length = 409

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 162 NNPKIVLIQFIGKFIKFVDGSKIENQFVIIFHXTLILFLW 43
           N   IV + F+G FI  V    +  QF   +  +L   LW
Sbjct: 317 NKEHIVTVMFVGNFIGIVCARSLHYQFYSWYFYSLPFLLW 356


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,383,255
Number of Sequences: 37544
Number of extensions: 162619
Number of successful extensions: 264
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)