Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29n16
         (759 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0039 + 302332-302471,302981-303509,304345-304389,304572-30...    30   2.3  
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892...    29   3.0  
08_02_1482 - 27428208-27428514,27428605-27428906,27431176-274322...    28   7.0  
08_01_0363 - 3176409-3177270,3182349-3182947,3183657-3184007           28   9.3  
03_06_0628 - 35179951-35180265,35180653-35180889,35180982-351811...    28   9.3  

>01_01_0039 +
           302332-302471,302981-303509,304345-304389,304572-304718,
           304834-304899,304993-305058,305171-305257
          Length = 359

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +3

Query: 153 LNLKWSRSPVMQQSTKRLSSPQLHSIIRPRRHPTTSLQPRRAINPH 290
           LN +WS+ P++  ST +LSS +L S+         +  P   ++PH
Sbjct: 37  LNHQWSQPPMLSSSTDQLSSYELESLQSVESQLAAAAPP--TLSPH 80


>01_06_0565 +
           30287253-30287502,30287522-30289010,30289133-30289277,
           30289679-30289729
          Length = 644

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 227 DNPPSTSSDNQPATSSGNQPSS 292
           D PPS SSD  P T  G  PS+
Sbjct: 336 DVPPSPSSDTSPTTPGGGSPST 357



 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 212 PSTSFDNPPSTSSDNQPAT-SSGNQP 286
           PST  + PPS SSD  P T   GN P
Sbjct: 433 PSTPCNAPPSPSSDTSPTTPGGGNYP 458



 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +2

Query: 218 TSFDNPPSTSSDNQPATSSGNQPSS 292
           T  D PPS SSD  P+T  G   SS
Sbjct: 126 TPSDTPPSPSSDTSPSTPGGGCSSS 150



 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +2

Query: 212 PSTSFDNPPSTSSDNQPATSSG 277
           PST  D PPS SS   P T  G
Sbjct: 355 PSTPCDTPPSPSSGTSPTTPGG 376


>08_02_1482 -
           27428208-27428514,27428605-27428906,27431176-27432228,
           27432305-27432421,27432510-27432843,27433064-27433188,
           27433408-27433475,27433555-27433636,27433753-27433866,
           27433942-27434042,27434145-27434234,27434615-27434819
          Length = 965

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
 Frame = +2

Query: 497 ANEYRRLFGPDEDERRYQPGHGAKLRRSVIVPFTEDAFKNYKNGLSMSILERKEDITYFV 676
           A  Y R+FGPD   R+       ++  SV+       F  Y    S           Y V
Sbjct: 65  AYTYDRVFGPDSSTRQVYEEGAKEVALSVVSGINSSIFA-YGQTSSGKTYTMTGITEYSV 123

Query: 677 FNHNDYYQK-MQRMFLVRFT 733
            +  DY +K  +R F++RF+
Sbjct: 124 LDIYDYIEKHPEREFILRFS 143


>08_01_0363 - 3176409-3177270,3182349-3182947,3183657-3184007
          Length = 603

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 562 TVTWLVSSFVFVGTEQPSILVGRTEIF 482
           TV WL+  F+FVG  +    +G+ + F
Sbjct: 473 TVFWLIPQFLFVGAGEAFTYIGQLDFF 499


>03_06_0628 -
           35179951-35180265,35180653-35180889,35180982-35181140,
           35181673-35181864,35182696-35182983,35183289-35183342,
           35183561-35183671,35183780-35184011,35184097-35184302
          Length = 597

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 192 STKRLSSPQLHSIIRPRRHPTTSLQPRR 275
           +++ L  P  H   RPR  PTT+ +PRR
Sbjct: 7   ASRALPPPPRHCARRPRAPPTTAPRPRR 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,445,302
Number of Sequences: 37544
Number of extensions: 369685
Number of successful extensions: 1108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)