Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29n16
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81098-1|CAB03183.1|  581|Caenorhabditis elegans Hypothetical pr...    36   0.024
Z32680-1|CAA83599.1| 1223|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>Z81098-1|CAB03183.1|  581|Caenorhabditis elegans Hypothetical
           protein K07A12.1 protein.
          Length = 581

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 22/62 (35%), Positives = 33/62 (53%)
 Frame = +2

Query: 533 DERRYQPGHGAKLRRSVIVPFTEDAFKNYKNGLSMSILERKEDITYFVFNHNDYYQKMQR 712
           DE R+ PG  A  R   IV      F +   GLSM   +++  I++F   HN+ Y++ +R
Sbjct: 90  DENRWPPGRRATGR---IVKNKPRWFPDRDYGLSMVETKKEGCISWFTLRHNNAYEQRER 146

Query: 713 MF 718
           MF
Sbjct: 147 MF 148


>Z32680-1|CAA83599.1| 1223|Caenorhabditis elegans Hypothetical
           protein C28A5.1 protein.
          Length = 1223

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -3

Query: 199 FVDCCITGLLLHFRLRLGMVANLQLITKIINISNEYNN 86
           F + CI GL+    L +G+  NL+ ++ ++ I  ++NN
Sbjct: 819 FDETCIKGLVRFVALGVGVDINLRNMSIVVPIGGKFNN 856


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,825,161
Number of Sequences: 27780
Number of extensions: 330771
Number of successful extensions: 1086
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)