Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29n13
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    96   5e-21
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    27   2.5  
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    27   3.3  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   3.3  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    26   5.8  

>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 96.3 bits (229), Expect = 5e-21
 Identities = 78/253 (30%), Positives = 113/253 (44%), Gaps = 32/253 (12%)
 Frame = +1

Query: 151 FISPIIQDNPTGWGPYEMPDQFRDMPYQPFSKGDRLGKISDWTMVQDK------------ 294
           F  P +    + WGP E      D+PY PFSKGDRLGKI+DW++ Q K            
Sbjct: 5   FKLPELAPVKSAWGPPETEQIGGDIPYAPFSKGDRLGKIADWSVDQPKDGREQRGRQGAF 64

Query: 295 --KYQNKYASQ-FGAGSSYAYFHDEDESTFHLVDTTRVQKPYQSYQXXXXXXXXXXXXXX 465
             +++++Y +  +GA S + Y H EDES+F ++D   V +   S +              
Sbjct: 65  AGRFRDQYQTYGYGASSIFGYQHSEDESSFSVIDRGSVNRTRTSARNGGTLLKVRGRGQN 124

Query: 466 XXXXXXMTTLNKPRERKLGK--------RWGQRGAPM--KIRDASVTVRPTWVTIED--- 606
                          R  G           G RG     K  D    +R   VT+ D   
Sbjct: 125 VQRGGRGGRYGSSGGRGAGDTVVSRSSGAGGARGRRFGWKDYDKHQRLRNASVTVGDDWQ 184

Query: 607 ----MDFPRLAKLSLPGIKEGEDIVSCGTLEYYDKAYDRVXVKHEKPLQRIDRIFHTVTT 774
               ++F  L+KL+L        + S G +  YDK++D++ VK EKPLQ +DR+ +  TT
Sbjct: 185 LLDEVEFSHLSKLNLAAAAP-VTVDSYGYIYPYDKSFDKIHVKSEKPLQALDRVHYNPTT 243

Query: 775 TDDPVIPSSQ*NS 813
           T+DPVI     NS
Sbjct: 244 TEDPVIQKLALNS 256


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 77  WFKIVT*HSELRCRNTYCRPKGR*GLFHP 163
           W+  V  + ELRC+N YC    R G+  P
Sbjct: 576 WWTPVYVNQELRCKNAYCDSIQRKGIKFP 604


>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 185 PVGLSCIMGEINLIGPSAGSTCSDIAVHYVKLQS*TTNN*VGTMYS 48
           P  LS     +NL+G   G   SD   H+V  +   ++  VGTMY+
Sbjct: 123 PEMLSQWASNLNLLGIPTGLRDSDATTHFVMNRQAGSSITVGTMYA 168


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 493 LNKPRERKLGKRWGQRGAPMKIRDASVTVRPTWVTIE 603
           L+KPR  ++ +++ Q+G   KI+      + TWV  E
Sbjct: 46  LDKPRRTRILEKFAQKGLHEKIQGGCGKYQGTWVPSE 82


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 615 EVHIFNRDPCWPYSYRC 565
           +VH +++   WPY+Y C
Sbjct: 375 DVHSYSQSVLWPYAYTC 391


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,513,362
Number of Sequences: 5004
Number of extensions: 73546
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)