Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29n13
         (847 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    27   0.22 
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   4.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   8.2  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   8.2  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 562 DASVTVRPTWVTIEDMDFPRLAKLSLPGIKEGEDI 666
           D ++ V   W+   D + P+LA  +   IK+ E+I
Sbjct: 583 DPNLAVYGVWINCLDPNLPKLALFATKDIKQNEEI 617


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 60  YHVFRLKCHTITFREN 13
           YH   LKC  + F EN
Sbjct: 77  YHRINLKCSLVEFSEN 92


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 502  PRERKLGKRWGQRGAP 549
            P E + G ++GQ GAP
Sbjct: 1815 PEEDQYGSQYGQYGAP 1830


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +1

Query: 499 KPRERKLGKRWGQRGAPMKIRDASVTVRPTWVTIEDMDFP 618
           K ++R L    G     ++I     T+RP + T++  ++P
Sbjct: 93  KKKKRSLMGAQGLSIRGLQINHEDETIRPVFSTLQRAEYP 132


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 185 VGDLTRCQTNLGT 223
           +G LT C TNLGT
Sbjct: 264 LGFLTFCPTNLGT 276


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,965
Number of Sequences: 438
Number of extensions: 4818
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)