Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29n12
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    25   5.0  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    25   5.0  
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    25   6.6  
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    25   8.7  

>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 65  GGRDVCRSCSCSFDT*PSSKY 127
           G  D C  C+C F   P SKY
Sbjct: 120 GKLDFCAHCNCRFTITPYSKY 140


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 136 RPNVFRTGSSVKGAGAASTYVTATTTNSNN 47
           RPN FRT SS K  G  S+ V +   N+ +
Sbjct: 421 RPNTFRTNSS-KSVGQGSSGVDSNQENAES 449


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 90  QLRHTSRPPRPTATTILTSYSPIFF 16
           ++ H SRPP P   T     SP FF
Sbjct: 488 RIEHLSRPPSPGIVTPPQRTSPSFF 512


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 108 VSKEQEQLRHTSRPPRPTA-TTILTSYSP 25
           +S E +Q     RPP PT+ TT  TS  P
Sbjct: 165 LSPESKQTSDGHRPPSPTSITTTSTSIDP 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 629,466
Number of Sequences: 5004
Number of extensions: 6666
Number of successful extensions: 35
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)