Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29n10
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   3.2  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   4.3  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   9.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 476  PHSTLYYERLRVVIINPIKNMYLESTDVYREKRTRLSAPCA 598
            PHSTL Y+     ++ P K    +S D  +E  T  +A  A
Sbjct: 1072 PHSTLEYKVKERHLMRPRKRDQKQSDDKTKETSTVTAAAAA 1112


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -1

Query: 651 AAIIYKIYNILYNRGSRKAQGADNRVLFSL*TSVLSKYI 535
           +++I +  N+  +RGS    G +N   + + T+  SKY+
Sbjct: 173 SSVIEEAQNLKMSRGSSVVTGMNNIETYIVNTNYSSKYM 211


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 171 AFDSIGEWVECVEILDGHTIER 106
           A  SI E+    E+L  HT+E+
Sbjct: 259 AMSSIAEFSVSTEVLQDHTLEK 280


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 698 NIPNSLFLFLYDIVFLNCCNNSINK*HVFV 787
           N+ N  F  +  ++ L C +  +NK  VF+
Sbjct: 51  NVINPFFCDMSPLLSLVCADTRLNKLAVFI 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,591
Number of Sequences: 438
Number of extensions: 4687
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)