Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29n08
(796 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 70 3e-13
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 43 6e-05
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 40 4e-04
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 37 0.003
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 37 0.004
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 36 0.009
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 34 0.027
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 33 0.036
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 33 0.036
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.14
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 31 0.14
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.19
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.25
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 29 0.77
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 29 0.77
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 28 1.8
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 28 1.8
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 4.1
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 26 7.1
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 26 7.1
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 70.1 bits (164), Expect = 3e-13
Identities = 30/67 (44%), Positives = 45/67 (67%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 185
+++E RNFF++FG +L+ + DK + +GF F+T+E+E V + P TI GK V+
Sbjct: 259 TEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVE 318
Query: 186 VKRATPK 206
VKRATPK
Sbjct: 319 VKRATPK 325
Score = 56.0 bits (129), Expect = 6e-09
Identities = 23/69 (33%), Positives = 46/69 (66%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 185
+DD +R++F +FG +L+ + D T + +GF F+TF++ + VN+++ + + + GK +D
Sbjct: 175 TDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM-SKEHHLDGKIID 233
Query: 186 VKRATPKPD 212
KRA P+ +
Sbjct: 234 PKRAIPREE 242
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 42.7 bits (96), Expect = 6e-05
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKTPKRTIGGKEV 182
++D++++ F FG + +V MP DK N KGF +I F +++ V L+ + G+ +
Sbjct: 335 AEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDAKPFQGRLL 394
Query: 183 DV 188
V
Sbjct: 395 HV 396
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 39.9 bits (89), Expect = 4e-04
Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Frame = +3
Query: 15 EIRNFFSEFGTILEVEMPFDKTKNQRK----GFCFITFESEQVVNDLLKTPK-RTIGGKE 179
EIR+ F GT+ +V +PF + + + G F+TF +++ V+ ++T +T+ +E
Sbjct: 59 EIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKAIETLNGKTLDDRE 118
Query: 180 VDVKRATP 203
+ V++A P
Sbjct: 119 IVVQKARP 126
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 37.1 bits (82), Expect = 0.003
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +3
Query: 9 DDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 152
+ ++R +FS+FG +L + M ++ K + FI FES V N + +T
Sbjct: 118 EKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAET 165
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 36.7 bits (81), Expect = 0.004
Identities = 14/42 (33%), Positives = 27/42 (64%)
Frame = +3
Query: 3 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 128
+++D+I FSEFG +++ + DK + KGF F+ +E ++
Sbjct: 42 LNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQR 83
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 35.5 bits (78), Expect = 0.009
Identities = 16/66 (24%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +3
Query: 3 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKE 179
+ +DE++ FS+FGT+ V + + +GF F++F + E+ + + + G+
Sbjct: 112 MQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRV 171
Query: 180 VDVKRA 197
++V++A
Sbjct: 172 LNVQKA 177
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 33.9 bits (74), Expect = 0.027
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 3 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN-DLLKTPKRTIGGKE 179
+ D + F E+GTI+ + D + KG+ ++ FE+ + + + I G+
Sbjct: 274 VDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRM 333
Query: 180 VDVKRATPKP 209
V++ + P+P
Sbjct: 334 VNLDLSNPRP 343
Score = 32.7 bits (71), Expect = 0.062
Identities = 15/67 (22%), Positives = 30/67 (44%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 185
++D++ F G I + +P D + KGF ++TF ++ I G+
Sbjct: 378 TEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCR 437
Query: 186 VKRATPK 206
+ +TP+
Sbjct: 438 LDFSTPR 444
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 33.5 bits (73), Expect = 0.036
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +3
Query: 3 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKTPKRTIGGKE 179
++ + I F +G I + MP K KG+C+I + +Q N + K + G+E
Sbjct: 110 VTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKMNNAELDGEE 169
Query: 180 --VDVKR 194
V +KR
Sbjct: 170 LFVSIKR 176
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 33.5 bits (73), Expect = 0.036
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 9 DDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 116
++E+R+ F FG I V + DK + KGF F+++
Sbjct: 215 EEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 31.5 bits (68), Expect = 0.14
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +3
Query: 12 DEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDV 188
D++ NFFS+ G I + + + +G+ F+TF + K K + + G+ + +
Sbjct: 19 DDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRL 78
Query: 189 KRATPK 206
ATP+
Sbjct: 79 DFATPR 84
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 31.5 bits (68), Expect = 0.14
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +3
Query: 3 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRT-IGGKE 179
+ + ++ + F F I V M +D+ + +G C + FE+ Q D KT + T + G E
Sbjct: 96 VLEKDVLSLFENFHPI-RVIMNYDRA-GRSEGSCDVYFETSQDAEDAQKTLQSTNLKGSE 153
Query: 180 VDVKRATP 203
+ + + +P
Sbjct: 154 IQISKKSP 161
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 31.1 bits (67), Expect = 0.19
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 185
+++ IR+FFS+FG + +VE+ N C + F S + N+ +P+ + +
Sbjct: 255 NEENIRSFFSKFGVLEKVEL------NPTHHSCVLEFTSHEAANNAWSSPEPIFNNRFIK 308
Query: 186 V 188
+
Sbjct: 309 I 309
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 30.7 bits (66), Expect = 0.25
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 116
S + ++ F G + V +P DKT ++KG+ F+ F
Sbjct: 104 SVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 29.1 bits (62), Expect = 0.77
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +3
Query: 3 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 122
++D +R+ +S FGT+ V + D +K ++ + I FE+
Sbjct: 179 VNDAYLRSIYSSFGTLQNVVIQKDISKEKKYVYSIIVFET 218
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 29.1 bits (62), Expect = 0.77
Identities = 13/68 (19%), Positives = 34/68 (50%)
Frame = +3
Query: 3 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEV 182
++++++ +FF E + + + D + +GF ++ FE+ ++ L + G+ V
Sbjct: 105 LTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGEDLMGRPV 162
Query: 183 DVKRATPK 206
+ A P+
Sbjct: 163 RITVAEPR 170
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 27.9 bits (59), Expect = 1.8
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = +3
Query: 3 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 122
+ +D++ FG +L ++ + KGFCF F++
Sbjct: 321 LGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKN 360
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 27.9 bits (59), Expect = 1.8
Identities = 8/45 (17%), Positives = 23/45 (51%)
Frame = +3
Query: 3 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 137
++ +++R F FG + ++++ + G C I+F+ ++
Sbjct: 105 VTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSIS 149
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/68 (14%), Positives = 34/68 (50%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 185
+++++ + F++FG + + + D+ KG+ I + + + + ++ ++++
Sbjct: 22 TEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKNLSLLDEKLE 81
Query: 186 VKRATPKP 209
V A +P
Sbjct: 82 VDFAFLEP 89
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 620 NVI*ESNRCKNL-RIKQCRGRARRLTSRFII 709
N++ N C+ + + Q RGRAR + S+F+I
Sbjct: 443 NLVIRFNICRTVTQYVQSRGRARAMASKFLI 473
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 128
SD+ + + + FG + + D N KG+ F FE E+
Sbjct: 308 SDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEK 348
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,179,716
Number of Sequences: 5004
Number of extensions: 34641
Number of successful extensions: 112
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -