Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29n08
(796 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 63 2e-10
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 63 2e-10
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 58 7e-09
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 58 7e-09
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 58 7e-09
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 54 1e-07
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 54 1e-07
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 52 5e-07
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 52 5e-07
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 48 8e-06
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 48 8e-06
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 48 8e-06
Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical pr... 42 5e-04
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 41 0.001
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 41 0.001
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 38 0.008
Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical pr... 37 0.014
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 37 0.014
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 36 0.025
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 36 0.025
U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (dele... 36 0.025
AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein... 36 0.025
AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein... 36 0.025
AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization... 36 0.025
AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization... 36 0.025
AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein. 36 0.025
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 35 0.058
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 35 0.058
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 35 0.077
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 34 0.10
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 34 0.13
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 33 0.31
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 32 0.41
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 32 0.41
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 32 0.54
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 32 0.54
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 32 0.54
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 32 0.54
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 32 0.54
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 32 0.54
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 32 0.54
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 32 0.54
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 32 0.54
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 31 1.3
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 31 1.3
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical pr... 30 1.7
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 1.7
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 30 1.7
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 30 1.7
Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 30 2.2
L07144-9|AAK21441.1| 737|Caenorhabditis elegans Hypothetical pr... 30 2.2
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 29 3.8
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 29 3.8
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 29 3.8
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 29 3.8
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 63.3 bits (147), Expect = 2e-10
Identities = 26/67 (38%), Positives = 41/67 (61%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 185
S+ ++R+ F +FG + ++E PFDK R+ F FI FE E+ + K+T G +E D
Sbjct: 122 SEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECD 181
Query: 186 VKRATPK 206
VK+A P+
Sbjct: 182 VKKAVPQ 188
Score = 46.8 bits (106), Expect = 2e-05
Identities = 17/65 (26%), Positives = 41/65 (63%)
Frame = +3
Query: 3 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEV 182
++++++ + F+++G + + ++ +D+T + +GF F+ F + + L ++TI GK V
Sbjct: 40 VNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSV 99
Query: 183 DVKRA 197
+VK A
Sbjct: 100 EVKPA 104
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 63.3 bits (147), Expect = 2e-10
Identities = 26/67 (38%), Positives = 41/67 (61%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 185
S+ ++R+ F +FG + ++E PFDK R+ F FI FE E+ + K+T G +E D
Sbjct: 122 SEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECD 181
Query: 186 VKRATPK 206
VK+A P+
Sbjct: 182 VKKAVPQ 188
Score = 46.8 bits (106), Expect = 2e-05
Identities = 17/65 (26%), Positives = 41/65 (63%)
Frame = +3
Query: 3 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEV 182
++++++ + F+++G + + ++ +D+T + +GF F+ F + + L ++TI GK V
Sbjct: 40 VNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSV 99
Query: 183 DVKRA 197
+VK A
Sbjct: 100 EVKPA 104
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 58.0 bits (134), Expect = 7e-09
Identities = 27/69 (39%), Positives = 41/69 (59%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 185
+DD +R F+S+FG I ++ + D T + +GF F+TF + V+ +K I GK VD
Sbjct: 35 TDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVD 94
Query: 186 VKRATPKPD 212
KRA P+ D
Sbjct: 95 PKRAVPRDD 103
Score = 45.2 bits (102), Expect = 5e-05
Identities = 17/69 (24%), Positives = 37/69 (53%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 185
++D + +F+++GT+ + E+ DK + +GF F+TF+ V+ + + G D
Sbjct: 126 TEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCD 185
Query: 186 VKRATPKPD 212
V++ K +
Sbjct: 186 VRKGLSKDE 194
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 58.0 bits (134), Expect = 7e-09
Identities = 27/69 (39%), Positives = 41/69 (59%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 185
+DD +R F+S+FG I ++ + D T + +GF F+TF + V+ +K I GK VD
Sbjct: 35 TDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVD 94
Query: 186 VKRATPKPD 212
KRA P+ D
Sbjct: 95 PKRAVPRDD 103
Score = 45.2 bits (102), Expect = 5e-05
Identities = 17/69 (24%), Positives = 37/69 (53%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 185
++D + +F+++GT+ + E+ DK + +GF F+TF+ V+ + + G D
Sbjct: 126 TEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCD 185
Query: 186 VKRATPKPD 212
V++ K +
Sbjct: 186 VRKGLSKDE 194
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 58.0 bits (134), Expect = 7e-09
Identities = 27/69 (39%), Positives = 41/69 (59%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 185
+DD +R F+S+FG I ++ + D T + +GF F+TF + V+ +K I GK VD
Sbjct: 35 TDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVD 94
Query: 186 VKRATPKPD 212
KRA P+ D
Sbjct: 95 PKRAVPRDD 103
Score = 45.2 bits (102), Expect = 5e-05
Identities = 17/69 (24%), Positives = 37/69 (53%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 185
++D + +F+++GT+ + E+ DK + +GF F+TF+ V+ + + G D
Sbjct: 126 TEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCD 185
Query: 186 VKRATPKPD 212
V++ K +
Sbjct: 186 VRKGLSKDE 194
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 54.0 bits (124), Expect = 1e-07
Identities = 25/65 (38%), Positives = 38/65 (58%)
Frame = +3
Query: 18 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 197
+R F+S+FG I ++ + D T + +GF F+TF + V+ +K I GK VD KRA
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRA 60
Query: 198 TPKPD 212
P+ D
Sbjct: 61 VPRDD 65
Score = 45.2 bits (102), Expect = 5e-05
Identities = 17/69 (24%), Positives = 37/69 (53%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 185
++D + +F+++GT+ + E+ DK + +GF F+TF+ V+ + + G D
Sbjct: 88 TEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCD 147
Query: 186 VKRATPKPD 212
V++ K +
Sbjct: 148 VRKGLSKDE 156
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 54.0 bits (124), Expect = 1e-07
Identities = 25/65 (38%), Positives = 38/65 (58%)
Frame = +3
Query: 18 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 197
+R F+S+FG I ++ + D T + +GF F+TF + V+ +K I GK VD KRA
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRA 60
Query: 198 TPKPD 212
P+ D
Sbjct: 61 VPRDD 65
Score = 45.2 bits (102), Expect = 5e-05
Identities = 17/69 (24%), Positives = 37/69 (53%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 185
++D + +F+++GT+ + E+ DK + +GF F+TF+ V+ + + G D
Sbjct: 88 TEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCD 147
Query: 186 VKRATPKPD 212
V++ K +
Sbjct: 148 VRKGLSKDE 156
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 52.0 bits (119), Expect = 5e-07
Identities = 20/65 (30%), Positives = 40/65 (61%)
Frame = +3
Query: 12 DEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVK 191
++++ +F +G + + + FDK + +GF F+TF+S++V + + + I GK V+ K
Sbjct: 148 EDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKMVECK 207
Query: 192 RATPK 206
+A PK
Sbjct: 208 KAQPK 212
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +3
Query: 12 DEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVK 191
+ +R++F FG + E + D + +GF FITF V+ +L + + GK++D K
Sbjct: 59 ENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNREHELDGKKIDPK 118
Query: 192 RATPK 206
A PK
Sbjct: 119 VAFPK 123
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 52.0 bits (119), Expect = 5e-07
Identities = 20/65 (30%), Positives = 40/65 (61%)
Frame = +3
Query: 12 DEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVK 191
++++ +F +G + + + FDK + +GF F+TF+S++V + + + I GK V+ K
Sbjct: 148 EDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKMVECK 207
Query: 192 RATPK 206
+A PK
Sbjct: 208 KAQPK 212
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +3
Query: 12 DEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVK 191
+ +R++F FG + E + D + +GF FITF V+ +L + + GK++D K
Sbjct: 59 ENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNREHELDGKKIDPK 118
Query: 192 RATPK 206
A PK
Sbjct: 119 VAFPK 123
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 48.0 bits (109), Expect = 8e-06
Identities = 21/67 (31%), Positives = 37/67 (55%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 185
+D+++ N+FS++G +++ + D +GF F+TF S + +GGK VD
Sbjct: 61 TDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVD 120
Query: 186 VKRATPK 206
KRA P+
Sbjct: 121 SKRAIPR 127
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 48.0 bits (109), Expect = 8e-06
Identities = 21/67 (31%), Positives = 37/67 (55%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 185
+D+++ N+FS++G +++ + D +GF F+TF S + +GGK VD
Sbjct: 81 TDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVD 140
Query: 186 VKRATPK 206
KRA P+
Sbjct: 141 SKRAIPR 147
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 48.0 bits (109), Expect = 8e-06
Identities = 21/67 (31%), Positives = 37/67 (55%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 185
+D+++ N+FS++G +++ + D +GF F+TF S + +GGK VD
Sbjct: 82 TDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVD 141
Query: 186 VKRATPK 206
KRA P+
Sbjct: 142 SKRAIPR 148
>Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical
protein C50B8.1 protein.
Length = 114
Score = 41.9 bits (94), Expect = 5e-04
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +3
Query: 15 EIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKR 194
++ ++F +G+I V M +D +GF ITF+S+ N ++ I G VDV+
Sbjct: 40 QLEHYFKRYGSIQSVNMFYDPDTGLHRGFASITFDSKDGANKAIEQRPHVIDGDRVDVEP 99
Query: 195 ATP 203
P
Sbjct: 100 YIP 102
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +3
Query: 3 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKE 179
++DD +R+ FS FGTI ++ D+ + KGF F+ FE E+ + + IG K
Sbjct: 354 LNDDGLRDHFSSFGTITSAKVMVDE-NGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKP 412
Query: 180 VDVKRATPKPD 212
+ V A K D
Sbjct: 413 LYVALAQRKED 423
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +3
Query: 3 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKE 179
++DD +R+ FS FGTI ++ D+ + KGF F+ FE E+ + + IG K
Sbjct: 354 LNDDGLRDHFSSFGTITSAKVMVDE-NGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKP 412
Query: 180 VDVKRATPKPD 212
+ V A K D
Sbjct: 413 LYVALAQRKED 423
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +3
Query: 3 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 122
+++DE+R+ F + G ++ + + DK KGF F+TFES
Sbjct: 187 MNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFES 226
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 37.9 bits (84), Expect = 0.008
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +3
Query: 3 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 128
+S+D IR+ FS+ G +L ++M D+ + KG+ FI F Q
Sbjct: 29 VSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQ 70
>Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical
protein F44G4.4a protein.
Length = 411
Score = 37.1 bits (82), Expect = 0.014
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 185
+D+ + +F + GT++ E+ K+ KGF F+ S N +L P+ I G+ D
Sbjct: 185 TDECFQKYFEDIGTVVFCEIK-RKSDGNSKGFGFVRMSSVGEQNKVLAIPQHMIDGRRCD 243
Query: 186 VK 191
VK
Sbjct: 244 VK 245
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 185
SD + +F +FG I E + D+ + +G+ F+T + K P I G++ +
Sbjct: 47 SDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKDPNPIIDGRKAN 106
Query: 186 VKRA 197
V A
Sbjct: 107 VNLA 110
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 36.3 bits (80), Expect = 0.025
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 128
+DD +R S++G I + DK N KG+ F+ FES Q
Sbjct: 119 NDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQ 159
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 36.3 bits (80), Expect = 0.025
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 128
+DD +R S++G I + DK N KG+ F+ FES Q
Sbjct: 93 NDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQ 133
>U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (deleted
in azoospermia)homolog protein 1 protein.
Length = 498
Score = 36.3 bits (80), Expect = 0.025
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK-TPKR 161
++ E+R F +F + +V+M Q KG+ FITFE+E ++ K TPK+
Sbjct: 78 TETELREHFEKFFAVKDVKM-VKSLDGQSKGYGFITFETEDQAEEIRKLTPKQ 129
>AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 36.3 bits (80), Expect = 0.025
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 3 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 149
++ +EI FSEFG +L V + D+ KG +TFE + N L+
Sbjct: 330 VTAEEIAQMFSEFGVVLLVTIDIDQDYGYPKGAARVTFERDSAFNRALE 378
>AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 36.3 bits (80), Expect = 0.025
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 3 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 149
++ +EI FSEFG +L V + D+ KG +TFE + N L+
Sbjct: 330 VTAEEIAQMFSEFGVVLLVTIDIDQDYGYPKGAARVTFERDSAFNRALE 378
>AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization of
germline protein1, isoform a protein.
Length = 405
Score = 36.3 bits (80), Expect = 0.025
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 3 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 149
++ +EI FSEFG +L V + D+ KG +TFE + N L+
Sbjct: 116 VTAEEIAQMFSEFGVVLLVTIDIDQDYGYPKGAARVTFERDSAFNRALE 164
>AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization of
germline protein1, isoform b protein.
Length = 619
Score = 36.3 bits (80), Expect = 0.025
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 3 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 149
++ +EI FSEFG +L V + D+ KG +TFE + N L+
Sbjct: 330 VTAEEIAQMFSEFGVVLLVTIDIDQDYGYPKGAARVTFERDSAFNRALE 378
>AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein.
Length = 499
Score = 36.3 bits (80), Expect = 0.025
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK-TPKR 161
++ E+R F +F + +V+M Q KG+ FITFE+E ++ K TPK+
Sbjct: 79 TETELREHFEKFFAVKDVKM-VKSLDGQSKGYGFITFETEDQAEEIRKLTPKQ 130
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 35.1 bits (77), Expect = 0.058
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 125
+++E+ NFFS G I V + D+ + +GF FI F E
Sbjct: 17 TEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEE 56
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 35.1 bits (77), Expect = 0.058
Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRT-IGGKEV 182
++D++ + FSE+G I + + D+ KG+ + +E+++ N+ + T + G+ V
Sbjct: 67 TEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQSNDTDLLGQNV 126
Query: 183 DV 188
V
Sbjct: 127 KV 128
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 34.7 bits (76), Expect = 0.077
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT-PKRTIGGKEV 182
+DDE++ FS+FGT+ V K + KG F+ F++E + + K + +E+
Sbjct: 695 TDDELKALFSKFGTVTSVRRVTHK-DGKPKGIAFVDFDTEASAQKCVASGDKLMLREREL 753
Query: 183 DVKRATP 203
+V + P
Sbjct: 754 EVALSNP 760
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 34.3 bits (75), Expect = 0.10
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 125
++D++ N+FS+ G + V + D+ + +GF F+ F E
Sbjct: 16 TEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEE 55
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 33.9 bits (74), Expect = 0.13
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 125
+++EI N+F+ G + V + +D+ + +GF F+ F E
Sbjct: 18 TEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEE 57
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 32.7 bits (71), Expect = 0.31
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +3
Query: 3 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKTPKRTIGGKE 179
I ++R F +FG + E ++ D N+ KG+ F+++ E + + +G +
Sbjct: 143 IDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRT 202
Query: 180 VDVKRATPKPD 212
+ AT KPD
Sbjct: 203 IRTNWATRKPD 213
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 3 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKE 179
+ +DEIR F FG I EV + +G+ F+ FE+ E +++ IGG+
Sbjct: 266 LGEDEIRRAFDRFGPINEVR------TFKIQGYAFVKFETKESAARAIVQMNNADIGGQI 319
Query: 180 V 182
V
Sbjct: 320 V 320
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 32.3 bits (70), Expect = 0.41
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 116
++ ++R+ F EFG I + ++ +D+ +GF FI F
Sbjct: 88 TEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYF 124
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 32.3 bits (70), Expect = 0.41
Identities = 10/42 (23%), Positives = 26/42 (61%)
Frame = +3
Query: 3 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 128
+S+ ++ FS++G ++ + + DK + KGF F+ ++ ++
Sbjct: 49 LSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQR 90
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 31.9 bits (69), Expect = 0.54
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 116
++ + R F ++G++ + DK+ KG CF+TF
Sbjct: 67 NETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 31.9 bits (69), Expect = 0.54
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 116
++ + R F ++G++ + DK+ KG CF+TF
Sbjct: 67 NETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 31.9 bits (69), Expect = 0.54
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 116
++ + R F ++G++ + DK+ KG CF+TF
Sbjct: 67 NETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 31.9 bits (69), Expect = 0.54
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 116
++ + R F ++G++ + DK+ KG CF+TF
Sbjct: 67 NETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 31.9 bits (69), Expect = 0.54
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 116
++ + R F ++G++ + DK+ KG CF+TF
Sbjct: 67 NETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 31.9 bits (69), Expect = 0.54
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 116
++ + R F ++G++ + DK+ KG CF+TF
Sbjct: 67 NETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 31.9 bits (69), Expect = 0.54
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 6 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 116
++ + R F ++G++ + DK+ KG CF+TF
Sbjct: 67 NETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 31.9 bits (69), Expect = 0.54
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +3
Query: 15 EIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKR 194
++ FFS G + +V + D + KG C++ F E+ V L + + G + ++R
Sbjct: 40 DLEEFFSAVGAVRDVRIITDSRTGRSKGICYVEFWDEESVPLGLALNGQRLMGAPLQIQR 99
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 31.9 bits (69), Expect = 0.54
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +3
Query: 15 EIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKR 194
++ FFS G + +V + D + KG C++ F E+ V L + + G + ++R
Sbjct: 185 DLEEFFSAVGAVRDVRIITDSRTGRSKGICYVEFWDEESVPLGLALNGQRLMGAPLQIQR 244
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 3 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 116
+ + ++R+ F +FG I E + DK KG F+T+
Sbjct: 40 LEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTY 77
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/42 (26%), Positives = 28/42 (66%)
Frame = +3
Query: 3 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 128
+S++ +++ F++FG + E ++ D + KG+ F++F ++Q
Sbjct: 146 VSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQ 187
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 3 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 116
+ + ++R+ F +FG I E + DK KG F+T+
Sbjct: 40 LEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTY 77
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3
Query: 3 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR-TIGGKE 179
+S+ + + G ++ V MP D+ +GF F+ F E+ + +K + GK
Sbjct: 24 VSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKP 83
Query: 180 VDVKRAT 200
+ V +A+
Sbjct: 84 IKVNKAS 90
>Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical
protein T04A8.6 protein.
Length = 307
Score = 30.3 bits (65), Expect = 1.7
Identities = 9/41 (21%), Positives = 24/41 (58%)
Frame = +3
Query: 9 DDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQV 131
+ E+ +F +FG +L + + ++ KG+ ++ F+++ V
Sbjct: 45 EKELLGYFRQFGNVLRIRVARNRRTGNHKGWAYVGFDNKAV 85
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3
Query: 3 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR-TIGGKE 179
+S+ + + G ++ V MP D+ +GF F+ F E+ + +K + GK
Sbjct: 34 VSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKP 93
Query: 180 VDVKRAT 200
+ V +A+
Sbjct: 94 IKVNKAS 100
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +3
Query: 30 FSEFGTILEVEMPFDKTKNQRKGFCFITFE-SEQVVNDLLKTPKRTIGGKEVDVKRATP 203
F FG ++ + +P D + +GF F+ F+ +E + + + GK + V A P
Sbjct: 31 FIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAIDNMNESELFGKTIRVNFARP 89
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/69 (18%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +3
Query: 3 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKTPKRTIGGKE 179
+SD+ + F ++ + + ++ + N+ KG+ F++F +SE V + + + +G +
Sbjct: 214 VSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVRAMREMDGKYVGNRP 273
Query: 180 VDVKRATPK 206
+ ++++ K
Sbjct: 274 IKLRKSAWK 282
>Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical
protein T12D8.2 protein.
Length = 207
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 54 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLK-TPKRTIGGKEVDVKRA 197
++ + D+ KGF ++TFE+EQ +N + G + + V RA
Sbjct: 40 DIHLVHDRDSGSFKGFAYVTFENEQQMNTAISGLNGADFGNRVLKVNRA 88
>L07144-9|AAK21441.1| 737|Caenorhabditis elegans Hypothetical
protein R05D3.2 protein.
Length = 737
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -1
Query: 160 LLGVLSKSFTTCSDSNVMKQKPFLWFFVLSKGISTSKI 47
L+G L S+ ++ PF +FF+ S+G STSKI
Sbjct: 156 LIGALWNYVFVLSNVSLFVLLPFSYFFIESQGFSTSKI 193
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +3
Query: 3 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKE 179
+++DEIR F+ FG I EV + + +G+ F+ F++ + +++ + +GG+
Sbjct: 138 LTEDEIRQGFASFGRITEVRI------FKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQL 191
Query: 180 V 182
V
Sbjct: 192 V 192
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +3
Query: 3 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKE 179
+++DEIR F+ FG I EV + + +G+ F+ F++ + +++ + +GG+
Sbjct: 148 LTEDEIRQGFASFGRITEVRI------FKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQL 201
Query: 180 V 182
V
Sbjct: 202 V 202
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +3
Query: 3 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKE 179
+++DEIR F+ FG I EV + + +G+ F+ F++ + +++ + +GG+
Sbjct: 251 LTEDEIRQGFASFGRITEVRI------FKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQL 304
Query: 180 V 182
V
Sbjct: 305 V 305
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +3
Query: 3 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKE 179
+++DEIR F+ FG I EV + + +G+ F+ F++ + +++ + +GG+
Sbjct: 219 LTEDEIRQGFASFGRITEVRI------FKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQL 272
Query: 180 V 182
V
Sbjct: 273 V 273
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,065,767
Number of Sequences: 27780
Number of extensions: 192545
Number of successful extensions: 586
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -