Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29m23
         (211 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac...   100   3e-23
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc...   100   3e-23
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce...    24   3.2  
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    23   7.3  
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    23   7.3  
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    23   7.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    22   9.6  
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar...    22   9.6  

>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score =  100 bits (239), Expect = 3e-23
 Identities = 44/69 (63%), Positives = 57/69 (82%)
 Frame = +1

Query: 4   KFRXSLXLXXGAVINCADNTGAKNLYVIAVQGIKGRLXRLPAAGSGDMIVATVKKGKPEL 183
           K+R +L L   A++NCADN+GAKNLY+++V G   RL RLPAA  GDM++ATVKKGKP+L
Sbjct: 12  KYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDL 71

Query: 184 RKKVMPAVV 210
           RKK+MPA+V
Sbjct: 72  RKKIMPAIV 80


>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score =  100 bits (239), Expect = 3e-23
 Identities = 44/69 (63%), Positives = 57/69 (82%)
 Frame = +1

Query: 4   KFRXSLXLXXGAVINCADNTGAKNLYVIAVQGIKGRLXRLPAAGSGDMIVATVKKGKPEL 183
           K+R +L L   A++NCADN+GAKNLY+++V G   RL RLPAA  GDM++ATVKKGKP+L
Sbjct: 12  KYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDL 71

Query: 184 RKKVMPAVV 210
           RKK+MPA+V
Sbjct: 72  RKKIMPAIV 80


>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 473

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -2

Query: 210 DHCRHYLFPEFRFXLFDCGHNHVPGTGRRQSXQATFDTLDS 88
           D+ +H+ FPE  F     GHN +  T    S    F   D+
Sbjct: 352 DNIKHWKFPEGAFMGNFEGHNAIVNTLSINSDNVMFSGADN 392


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 205 LPALPFSGVQVXPF*LWPQSCPRN 134
           + A+PFS + +  + + P SC RN
Sbjct: 276 ISAVPFSSLPLDRYQISPYSCLRN 299


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 86  ITYRFFAPVLSAQLITAP 33
           + Y F  P+LS QL T P
Sbjct: 80  VAYSFSDPILSTQLRTPP 97


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 182 SSGXPFLTVATIMSPEPAAGSLXRRPL 102
           SS     T ATI +P P++G   + P+
Sbjct: 299 SSVHSVATEATISNPRPSSGRFQQTPI 325


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 170 PFLTVATIMSPEPAAGSLXRRPL 102
           PF+   T  S EPA+ S   +PL
Sbjct: 313 PFVVSNTANSDEPASSSKPAKPL 335


>SPAC222.11 |hem13||coproporphyrinogen III oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 312

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 113 RRPLIPWTAITYRFFAPVLS 54
           R P+ P T + YR+F  V S
Sbjct: 110 RNPMAPTTHLNYRYFELVNS 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 736,892
Number of Sequences: 5004
Number of extensions: 10769
Number of successful extensions: 27
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 49
effective length of database: 2,117,282
effective search space used: 42345640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)