Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29m23
         (211 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC062716-1|AAH62716.1|  140|Homo sapiens ribosomal protein L23 p...   121   4e-28
X55954-1|CAA39417.1|  140|Homo sapiens HL23 ribosomal protein pr...   121   5e-28
X52839-1|CAA37023.1|  140|Homo sapiens ribosomal protein L17 pro...   121   5e-28
BC106061-1|AAI06062.1|  140|Homo sapiens RPL23 protein protein.       121   5e-28
BC104651-1|AAI04652.1|  140|Homo sapiens ribosomal protein L23 p...   121   5e-28
BC010114-1|AAH10114.1|  140|Homo sapiens ribosomal protein L23 p...   121   5e-28
BC003518-1|AAH03518.1|  134|Homo sapiens Similar to ribosomal pr...   121   5e-28
AB061827-1|BAB79465.1|  140|Homo sapiens ribosomal protein L23 p...   121   5e-28
BC034378-1|AAH34378.1|   77|Homo sapiens RPL23 protein protein.       112   2e-25
AK131400-1|BAD18547.1|  852|Homo sapiens protein ( Homo sapiens ...    29   2.7  
AK128850-1|BAC87646.1|  673|Homo sapiens protein ( Homo sapiens ...    29   2.7  
AJ313524-1|CAC86408.1|  852|Homo sapiens putative binding protei...    29   2.7  

>BC062716-1|AAH62716.1|  140|Homo sapiens ribosomal protein L23
           protein.
          Length = 140

 Score =  121 bits (292), Expect = 4e-28
 Identities = 58/70 (82%), Positives = 63/70 (90%)
 Frame = +1

Query: 1   AKFRXSLXLXXGAVINCADNTGAKNLYVIAVQGIKGRLXRLPAAGSGDMIVATVKKGKPE 180
           AKFR SL L  GAVINCADNTGAKNLY+I+V+GIKGRL RLPAAG GDM++ATVKKGKPE
Sbjct: 12  AKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPE 71

Query: 181 LRKKVMPAVV 210
           LRKKV PAVV
Sbjct: 72  LRKKVRPAVV 81


>X55954-1|CAA39417.1|  140|Homo sapiens HL23 ribosomal protein
           protein.
          Length = 140

 Score =  121 bits (291), Expect = 5e-28
 Identities = 58/70 (82%), Positives = 63/70 (90%)
 Frame = +1

Query: 1   AKFRXSLXLXXGAVINCADNTGAKNLYVIAVQGIKGRLXRLPAAGSGDMIVATVKKGKPE 180
           AKFR SL L  GAVINCADNTGAKNLY+I+V+GIKGRL RLPAAG GDM++ATVKKGKPE
Sbjct: 12  AKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPE 71

Query: 181 LRKKVMPAVV 210
           LRKKV PAVV
Sbjct: 72  LRKKVHPAVV 81


>X52839-1|CAA37023.1|  140|Homo sapiens ribosomal protein L17
           protein.
          Length = 140

 Score =  121 bits (291), Expect = 5e-28
 Identities = 58/70 (82%), Positives = 63/70 (90%)
 Frame = +1

Query: 1   AKFRXSLXLXXGAVINCADNTGAKNLYVIAVQGIKGRLXRLPAAGSGDMIVATVKKGKPE 180
           AKFR SL L  GAVINCADNTGAKNLY+I+V+GIKGRL RLPAAG GDM++ATVKKGKPE
Sbjct: 12  AKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPE 71

Query: 181 LRKKVMPAVV 210
           LRKKV PAVV
Sbjct: 72  LRKKVHPAVV 81


>BC106061-1|AAI06062.1|  140|Homo sapiens RPL23 protein protein.
          Length = 140

 Score =  121 bits (291), Expect = 5e-28
 Identities = 58/70 (82%), Positives = 63/70 (90%)
 Frame = +1

Query: 1   AKFRXSLXLXXGAVINCADNTGAKNLYVIAVQGIKGRLXRLPAAGSGDMIVATVKKGKPE 180
           AKFR SL L  GAVINCADNTGAKNLY+I+V+GIKGRL RLPAAG GDM++ATVKKGKPE
Sbjct: 12  AKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPE 71

Query: 181 LRKKVMPAVV 210
           LRKKV PAVV
Sbjct: 72  LRKKVHPAVV 81


>BC104651-1|AAI04652.1|  140|Homo sapiens ribosomal protein L23
           protein.
          Length = 140

 Score =  121 bits (291), Expect = 5e-28
 Identities = 58/70 (82%), Positives = 63/70 (90%)
 Frame = +1

Query: 1   AKFRXSLXLXXGAVINCADNTGAKNLYVIAVQGIKGRLXRLPAAGSGDMIVATVKKGKPE 180
           AKFR SL L  GAVINCADNTGAKNLY+I+V+GIKGRL RLPAAG GDM++ATVKKGKPE
Sbjct: 12  AKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPE 71

Query: 181 LRKKVMPAVV 210
           LRKKV PAVV
Sbjct: 72  LRKKVHPAVV 81


>BC010114-1|AAH10114.1|  140|Homo sapiens ribosomal protein L23
           protein.
          Length = 140

 Score =  121 bits (291), Expect = 5e-28
 Identities = 58/70 (82%), Positives = 63/70 (90%)
 Frame = +1

Query: 1   AKFRXSLXLXXGAVINCADNTGAKNLYVIAVQGIKGRLXRLPAAGSGDMIVATVKKGKPE 180
           AKFR SL L  GAVINCADNTGAKNLY+I+V+GIKGRL RLPAAG GDM++ATVKKGKPE
Sbjct: 12  AKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPE 71

Query: 181 LRKKVMPAVV 210
           LRKKV PAVV
Sbjct: 72  LRKKVHPAVV 81


>BC003518-1|AAH03518.1|  134|Homo sapiens Similar to ribosomal
           protein L23 protein.
          Length = 134

 Score =  121 bits (291), Expect = 5e-28
 Identities = 58/70 (82%), Positives = 63/70 (90%)
 Frame = +1

Query: 1   AKFRXSLXLXXGAVINCADNTGAKNLYVIAVQGIKGRLXRLPAAGSGDMIVATVKKGKPE 180
           AKFR SL L  GAVINCADNTGAKNLY+I+V+GIKGRL RLPAAG GDM++ATVKKGKPE
Sbjct: 6   AKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPE 65

Query: 181 LRKKVMPAVV 210
           LRKKV PAVV
Sbjct: 66  LRKKVHPAVV 75


>AB061827-1|BAB79465.1|  140|Homo sapiens ribosomal protein L23
           protein.
          Length = 140

 Score =  121 bits (291), Expect = 5e-28
 Identities = 58/70 (82%), Positives = 63/70 (90%)
 Frame = +1

Query: 1   AKFRXSLXLXXGAVINCADNTGAKNLYVIAVQGIKGRLXRLPAAGSGDMIVATVKKGKPE 180
           AKFR SL L  GAVINCADNTGAKNLY+I+V+GIKGRL RLPAAG GDM++ATVKKGKPE
Sbjct: 12  AKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPE 71

Query: 181 LRKKVMPAVV 210
           LRKKV PAVV
Sbjct: 72  LRKKVHPAVV 81


>BC034378-1|AAH34378.1|   77|Homo sapiens RPL23 protein protein.
          Length = 77

 Score =  112 bits (270), Expect = 2e-25
 Identities = 53/64 (82%), Positives = 58/64 (90%)
 Frame = +1

Query: 1   AKFRXSLXLXXGAVINCADNTGAKNLYVIAVQGIKGRLXRLPAAGSGDMIVATVKKGKPE 180
           AKFR SL L  GAVINCADNTGAKNLY+I+V+GIKGRL RLPAAG GDM++ATVKKGKPE
Sbjct: 12  AKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPE 71

Query: 181 LRKK 192
           LRKK
Sbjct: 72  LRKK 75


>AK131400-1|BAD18547.1|  852|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16493 fis, clone CTONG3004550, weakly  similar
           to Homo sapiens SH3-domain binding protein 4 (SH3BP4).
           ).
          Length = 852

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 195 YLFPEFRFXLFDCGHNHVPG 136
           Y+ P F   L  CGHN++PG
Sbjct: 379 YIHPNFTVVLTVCGHNYMPG 398


>AK128850-1|BAC87646.1|  673|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46632 fis, clone TRACH2024730, weakly  similar
           to Homo sapiens SH3-domain binding protein 4 (SH3BP4).
           ).
          Length = 673

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 195 YLFPEFRFXLFDCGHNHVPG 136
           Y+ P F   L  CGHN++PG
Sbjct: 200 YIHPSFTVVLTVCGHNYMPG 219


>AJ313524-1|CAC86408.1|  852|Homo sapiens putative binding protein
           7a5 protein.
          Length = 852

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 195 YLFPEFRFXLFDCGHNHVPG 136
           Y+ P F   L  CGHN++PG
Sbjct: 379 YIHPSFTVVLTVCGHNYMPG 398


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,705,505
Number of Sequences: 237096
Number of extensions: 502978
Number of successful extensions: 990
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 76,859,062
effective HSP length: 48
effective length of database: 65,478,454
effective search space used: 1375047534
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)