Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29m23
         (211 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3487|AAF46914.1|  140|Drosophila melanogaster CG3661-PA...   121   2e-28
M85295-1|AAA28867.1|  140|Drosophila melanogaster ribosomal prot...   111   1e-25
AY113597-1|AAM29602.1|  126|Drosophila melanogaster RH47776p pro...    29   1.2  
U43733-1|AAA86639.1|  904|Drosophila melanogaster Abrupt protein.      26   8.3  
BT003807-1|AAO41490.1|  369|Drosophila melanogaster AT11330p pro...    26   8.3  
BT001583-1|AAN71338.1|  894|Drosophila melanogaster RE25924p pro...    26   8.3  
AE014134-2051|AAN10774.1|  894|Drosophila melanogaster CG4807-PB...    26   8.3  
AE014134-2050|AAF53087.2|  904|Drosophila melanogaster CG4807-PA...    26   8.3  

>AE013599-3487|AAF46914.1|  140|Drosophila melanogaster CG3661-PA
           protein.
          Length = 140

 Score =  121 bits (291), Expect = 2e-28
 Identities = 59/69 (85%), Positives = 61/69 (88%)
 Frame = +1

Query: 4   KFRXSLXLXXGAVINCADNTGAKNLYVIAVQGIKGRLXRLPAAGSGDMIVATVKKGKPEL 183
           KFR SL L  GAV+NCADNTGAKNLYVIAV GI+GRL RLPAAG GDM VATVKKGKPEL
Sbjct: 13  KFRISLGLPVGAVMNCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPEL 72

Query: 184 RKKVMPAVV 210
           RKKVMPAVV
Sbjct: 73  RKKVMPAVV 81


>M85295-1|AAA28867.1|  140|Drosophila melanogaster ribosomal protein
           L17A protein.
          Length = 140

 Score =  111 bits (267), Expect = 1e-25
 Identities = 54/64 (84%), Positives = 56/64 (87%)
 Frame = +1

Query: 4   KFRXSLXLXXGAVINCADNTGAKNLYVIAVQGIKGRLXRLPAAGSGDMIVATVKKGKPEL 183
           KFR SL L  GAV+NCADNTGAKNLYVIAV GI+GRL RLPAAG GDM VATVKKGKPEL
Sbjct: 13  KFRISLGLPVGAVMNCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPEL 72

Query: 184 RKKV 195
           RKKV
Sbjct: 73  RKKV 76


>AY113597-1|AAM29602.1|  126|Drosophila melanogaster RH47776p
           protein.
          Length = 126

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +3

Query: 63  RGKESVCDRCPRYQRSPXQTAGGRF-RGHDCGHSQKG 170
           R  ES  D C RY R+  Q  G RF RG  C     G
Sbjct: 32  RSGESRGDECSRYSRTRCQRTGHRFRRGGRCHRQATG 68


>U43733-1|AAA86639.1|  904|Drosophila melanogaster Abrupt protein.
          Length = 904

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 203 AGITFFRSSGXPFLTVATIMSPEPAAGSL-XRRPL 102
           AG   F  SG P LT+  IM  E AAG+L   RPL
Sbjct: 809 AGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPL 842


>BT003807-1|AAO41490.1|  369|Drosophila melanogaster AT11330p
           protein.
          Length = 369

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 203 AGITFFRSSGXPFLTVATIMSPEPAAGSL-XRRPL 102
           AG   F  SG P LT+  IM  E AAG+L   RPL
Sbjct: 274 AGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPL 307


>BT001583-1|AAN71338.1|  894|Drosophila melanogaster RE25924p
           protein.
          Length = 894

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 203 AGITFFRSSGXPFLTVATIMSPEPAAGSL-XRRPL 102
           AG   F  SG P LT+  IM  E AAG+L   RPL
Sbjct: 799 AGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPL 832


>AE014134-2051|AAN10774.1|  894|Drosophila melanogaster CG4807-PB,
           isoform B protein.
          Length = 894

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 203 AGITFFRSSGXPFLTVATIMSPEPAAGSL-XRRPL 102
           AG   F  SG P LT+  IM  E AAG+L   RPL
Sbjct: 799 AGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPL 832


>AE014134-2050|AAF53087.2|  904|Drosophila melanogaster CG4807-PA,
           isoform A protein.
          Length = 904

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 203 AGITFFRSSGXPFLTVATIMSPEPAAGSL-XRRPL 102
           AG   F  SG P LT+  IM  E AAG+L   RPL
Sbjct: 809 AGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPL 842


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,114,267
Number of Sequences: 53049
Number of extensions: 157330
Number of successful extensions: 650
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 24,988,368
effective HSP length: 49
effective length of database: 22,388,967
effective search space used: 447779340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)