Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29m23
         (211 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   109   3e-25
AC024877-13|AAF60901.2|  710|Caenorhabditis elegans Nematode ast...    26   4.2  
U39677-3|AAC47957.2|  565|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  109 bits (261), Expect = 3e-25
 Identities = 52/70 (74%), Positives = 59/70 (84%)
 Frame = +1

Query: 1   AKFRXSLXLXXGAVINCADNTGAKNLYVIAVQGIKGRLXRLPAAGSGDMIVATVKKGKPE 180
           AKFR SL L  GAV+NCADNTGAKNL+VI+V GI+GRL RLP+AG GDM V +VKKGKPE
Sbjct: 12  AKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKKGKPE 71

Query: 181 LRKKVMPAVV 210
           LRKKV+  VV
Sbjct: 72  LRKKVLQGVV 81


>AC024877-13|AAF60901.2|  710|Caenorhabditis elegans Nematode
           astacin protease protein30 protein.
          Length = 710

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 167 FLTVATIMSPEPAAGSLXRRPLIPWTA 87
           F T+AT+  P P  G     P +P TA
Sbjct: 87  FPTLATVAPPAPGPGGPTLEPFLPTTA 113


>U39677-3|AAC47957.2|  565|Caenorhabditis elegans Hypothetical
           protein C16E9.1 protein.
          Length = 565

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 208 PLPALPFSGVQVXPF*LWPQSCPR 137
           P PA P +G++  P   W Q  P+
Sbjct: 57  PTPAPPSNGLRAPPMPKWTQEIPK 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,356,484
Number of Sequences: 27780
Number of extensions: 69616
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 12,740,198
effective HSP length: 49
effective length of database: 11,378,978
effective search space used: 227579560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)