Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29m19
(747 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.07c |tsf1||mitochondrial translation elongation factor E... 48 1e-06
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 32 0.076
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.70
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.2
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 27 3.8
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 5.0
SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family ... 25 8.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 8.7
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 25 8.7
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom... 25 8.7
>SPBC800.07c |tsf1||mitochondrial translation elongation factor
EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 299
Score = 48.4 bits (110), Expect = 1e-06
Identities = 43/199 (21%), Positives = 79/199 (39%), Gaps = 13/199 (6%)
Frame = +2
Query: 167 LAKLRKKTGYTIANCKKALEMHN-NDADKAETWLHEQAQAMGWAKATKLAGRTALQGLV- 340
+ KLR +T ++ K+++E + + A L ++ G A K RTA +G +
Sbjct: 37 IKKLRSETNASMDLVKQSVEEAGVGNLELAREILKKKIVQRGGKLAEKSKNRTAKEGWII 96
Query: 341 -AVKFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFA---HTKLQAKGPITKME 508
+ D + E+NCE+DFVA+ FQ + A + H+ + +
Sbjct: 97 QCISEDGRKAVMAEINCESDFVAQTTPFQDLARRIASTFLHYLPTNHSSYSVEATLKNEI 156
Query: 509 LDSEQLGTLHAEGGKK-------LSEILALFIGSVGENAVLRRAECWKANSEDVKIAGYT 667
L + + + E +K L E + GE ++R C A I ++
Sbjct: 157 LKHQAYVSKNHEANEKDVSSNVSLEEEIVKMTSFTGEKVQVQRLHCMNARVPSTAIGIFS 216
Query: 668 HPAPXXXXXXXXGKYGALL 724
H A G+ G+++
Sbjct: 217 HGAKQSSPLQQLGRIGSMV 235
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 32.3 bits (70), Expect = 0.076
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -1
Query: 396 SVSQLSSTRAPW-FLSNLTATNPWRAVLPANLVAFAHPIAWACSWSHV-SALSASLLCIS 223
S +L+ST W F++N+ + PW LP+ + H + S + + L LLCIS
Sbjct: 3948 SYLKLASTEPLWLFINNIHLSTPWAEKLPSKMSNHLHKNSRIVCLSEIHNQLPHQLLCIS 4007
Query: 222 NAFL 211
+ +
Sbjct: 4008 RSIV 4011
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.1 bits (62), Expect = 0.70
Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 6/145 (4%)
Frame = -1
Query: 621 SARLSTAFSPTEPIKSANISDNFFPPSACNVPSCSLSSSIFVIGPLACSLV*ANLNEAIA 442
S+ S+ S + I S++ S F S + PS S+SSSI + S + + I+
Sbjct: 581 SSSTSSPSSTSLSISSSSTSSTFSSASTSS-PS-SISSSISSSSTILSSPTPSTSSLMIS 638
Query: 441 ASSIIF*NLSFLATKSVSQLSSTRAPWFLSNLTATNPWRAVLPANLVAFAHPIAWA---- 274
+SSII + S L++ + S+ + S++ ++ ++L+ + P+A +
Sbjct: 639 SSSIISGSSSILSSSISTIPISSSLSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSP 698
Query: 273 --CSWSHVSALSASLLCISNAFLQL 205
S S VS SASL I+++ L L
Sbjct: 699 IPSSSSLVSTYSASLSNITHSSLSL 723
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.3 bits (60), Expect = 1.2
Identities = 25/96 (26%), Positives = 47/96 (48%)
Frame = -1
Query: 621 SARLSTAFSPTEPIKSANISDNFFPPSACNVPSCSLSSSIFVIGPLACSLV*ANLNEAIA 442
S+ LST+ P+ S++ S + S+ + S S SSS + + S + + I+
Sbjct: 232 SSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTIS 291
Query: 441 ASSIIF*NLSFLATKSVSQLSSTRAPWFLSNLTATN 334
+SS + S +T S SS+ + F S L++++
Sbjct: 292 SSSSS--SSSPTSTSSTISSSSSSSSSFSSTLSSSS 325
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 26.6 bits (56), Expect = 3.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 191 GYTIANCKKALEMHNNDADKAETWL 265
G+T+A +K L NN+ ++A W+
Sbjct: 652 GFTVAQARKGLLESNNNIERAVDWI 676
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 5.0
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Frame = -1
Query: 648 TSSLFAFQHSARLSTAFSPTEPIKSANISDNFFPPSACNVPSCSLSSSIFVIGPLACSLV 469
+SS +A S S + S N + + P S+ S + SSS+ + SL
Sbjct: 71 SSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLA 130
Query: 468 *ANL-NEAIAASSIIF*NLSFLATKSVSQLSST 373
+++ + ++A+SSI +L+ +T S S SS+
Sbjct: 131 SSSITSSSLASSSITSSSLASSSTTSSSLASSS 163
Score = 25.4 bits (53), Expect = 8.7
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Frame = -1
Query: 651 LTSSLFAFQHSARLSTAFSPT-EPIKSANISDNFFPPSACNVPSCSLSSSIFVIGPLACS 475
LTSS S +T+ SPT + S++ + + S + S SL+SS LA S
Sbjct: 85 LTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASS--STTSSSLASSSITSSSLASS 142
Query: 474 LV*ANLNEAIAASSIIF*NLSFLATKSVSQLSSTRAPW--FLSNLTATN 334
+ + ++A+SS +L+ +T S + + T + LS+ A+N
Sbjct: 143 SI---TSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASN 188
>SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 131 TSPAYKAAESSLLAKLRKKTGYTIANCKKALEMHNND 241
T P Y ES AK+ K+ G+ + L H+N+
Sbjct: 301 TFPFYHLIESEGFAKMAKRLGHGVYGLPYYLVFHHNE 337
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 134 SPAYKAAE-SSLLAKLRKKTGYTIANCKKALEMHNNDADKAETW 262
+PAY+ E ++ K +K+TG N K + D A+ W
Sbjct: 345 NPAYEKWEVREVVGKKKKRTGILAINNKSIVLTFTKTMDAAQVW 388
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +2
Query: 128 HTSPAYKAAESSLLAKLRKKTGYTIANCKKALEMHNNDADKAETWLHEQAQAMG 289
H + +S L +R +A K +E A KA+TWL +A+G
Sbjct: 741 HKDECFPNTDSDLTVLVRYDDNALLAAYSKVVER----AHKADTWLENYKEALG 790
>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 416
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 356 KNHGALVELNCETDFVAKNDKFQKMIEDAA 445
K +G +V++N DF+ K + I+DAA
Sbjct: 258 KTNGGVVQVNFYQDFIRKPGSDRATIDDAA 287
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,153,439
Number of Sequences: 5004
Number of extensions: 65020
Number of successful extensions: 203
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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