Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29m19
         (747 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L37936-1|AAC37577.1|  294|Homo sapiens elongation factor Ts prot...   149   1e-35
AF110399-1|AAD20224.1|  325|Homo sapiens elongation factor Ts pr...   146   1e-34
BC093068-1|AAH93068.1|  325|Homo sapiens TSFM protein protein.        143   5e-34
BC022862-1|AAH22862.1|  346|Homo sapiens Ts translation elongati...   130   4e-30
Y18880-1|CAB56154.1|  715|Homo sapiens midline 2 protein protein.      31   4.4  
BT006663-1|AAP35309.1|  685|Homo sapiens midline 2 protein.            31   4.4  
BC017707-1|AAH17707.1|  685|Homo sapiens midline 2 protein.            31   4.4  
AY625004-1|AAT48105.1|  685|Homo sapiens TRIM1 beta protein.           31   4.4  
AL109946-4|CAO72054.1|  685|Homo sapiens midline 2 protein.            31   4.4  
AL109946-3|CAO72053.1|  715|Homo sapiens midline 2 protein.            31   4.4  
AL034399-3|CAI42074.1|  685|Homo sapiens midline 2 protein.            31   4.4  
AL034399-2|CAI42073.1|  715|Homo sapiens midline 2 protein.            31   4.4  
AF196481-1|AAF07341.1|  685|Homo sapiens RING finger protein pro...    31   4.4  
AK131308-1|BAD18474.1|  891|Homo sapiens protein ( Homo sapiens ...    30   7.7  

>L37936-1|AAC37577.1|  294|Homo sapiens elongation factor Ts
           protein.
          Length = 294

 Score =  149 bits (361), Expect = 1e-35
 Identities = 84/207 (40%), Positives = 116/207 (56%), Gaps = 6/207 (2%)
 Frame = +2

Query: 122 RIHTSPAYKAAESS--LLAKLRKKTGYTIANCKKALEMHNNDADKAETWLHEQAQAMGWA 295
           R++  P   A+ SS  LL KLR+KTGY+  NCKKALE    D  +AE WLH++AQ  GW+
Sbjct: 2   RVYAGPRLSASASSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQKEGWS 61

Query: 296 KATKLAGRTALQGLVAVKFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFAHTK 475
           KA KL GR   +GL+ +  + N   LVE+NCETDFV++N KFQ +++  A+ +     T 
Sbjct: 62  KAAKLQGRKTKEGLIGLLQEGNTTVLVEVNCETDFVSRNLKFQLLVQQVALGTMMHCQTL 121

Query: 476 LQAKGPITKMELDSEQLGTLHAEGGKK--LSEILALFIGSVGENAVLRRAECWKANSEDV 649
                  +K  L+S +L  L A   ++  L + LAL IG +GEN +L+RA  W       
Sbjct: 122 KDQPSAYSKGFLNSSELSGLPAGPDREGSLKDQLALAIGKLGENMILKRA-AWVKVPSGF 180

Query: 650 KIAGYTHPA--PXXXXXXXXGKYGALL 724
            +  Y H A           GKYGAL+
Sbjct: 181 YVGSYVHGAMQSPSLHKLVLGKYGALV 207


>AF110399-1|AAD20224.1|  325|Homo sapiens elongation factor Ts
           protein.
          Length = 325

 Score =  146 bits (353), Expect = 1e-34
 Identities = 83/205 (40%), Positives = 114/205 (55%), Gaps = 6/205 (2%)
 Frame = +2

Query: 128 HTSPAYKAAESS--LLAKLRKKTGYTIANCKKALEMHNNDADKAETWLHEQAQAMGWAKA 301
           +  P   A+ SS  LL KLR+KTGY+  NCKKALE    D  +AE WLH++AQ  GW+KA
Sbjct: 35  YAGPRLSASASSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQKEGWSKA 94

Query: 302 TKLAGRTALQGLVAVKFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFAHTKLQ 481
            KL GR   +GL+ +  + N   LVE+NCETDFV++N KFQ +++  A+ +     T   
Sbjct: 95  AKLQGRKTKEGLIGLLQEGNTTVLVEVNCETDFVSRNLKFQLLVQQVALGTMMHCQTLKD 154

Query: 482 AKGPITKMELDSEQLGTLHAEGGKK--LSEILALFIGSVGENAVLRRAECWKANSEDVKI 655
                +K  L+S +L  L A   ++  L + LAL IG +GEN +L+RA  W        +
Sbjct: 155 QPSAYSKGFLNSSELSGLPAGPDREGSLKDQLALAIGKLGENMILKRA-AWVKVPSGFYV 213

Query: 656 AGYTHPA--PXXXXXXXXGKYGALL 724
             Y H A           GKYGAL+
Sbjct: 214 GSYVHGAMQSPSLHKLVLGKYGALV 238


>BC093068-1|AAH93068.1|  325|Homo sapiens TSFM protein protein.
          Length = 325

 Score =  143 bits (347), Expect = 5e-34
 Identities = 82/205 (40%), Positives = 113/205 (55%), Gaps = 6/205 (2%)
 Frame = +2

Query: 128 HTSPAYKAAESS--LLAKLRKKTGYTIANCKKALEMHNNDADKAETWLHEQAQAMGWAKA 301
           +  P   A+ SS  LL KLR+KTGY+  NCKKALE    D  +AE WLH++AQ  GW+KA
Sbjct: 35  YAGPRLSASASSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQKEGWSKA 94

Query: 302 TKLAGRTALQGLVAVKFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFAHTKLQ 481
            KL GR   +GL+ +  + N   LVE+NCETDFV++N KFQ +++  A+ +     T   
Sbjct: 95  AKLQGRKTKEGLIGLLQEGNTTVLVEVNCETDFVSRNLKFQLLVQQVALGTMMHCQTLKD 154

Query: 482 AKGPITKMELDSEQLGTLHAEGGKK--LSEILALFIGSVGENAVLRRAECWKANSEDVKI 655
                +K  L+S +L  L A   ++  L + LAL IG +GE  +L+RA  W        +
Sbjct: 155 QPSAYSKGFLNSSELSGLPAGPDREGSLKDQLALAIGKLGETMILKRA-AWVKVPSGFYV 213

Query: 656 AGYTHPA--PXXXXXXXXGKYGALL 724
             Y H A           GKYGAL+
Sbjct: 214 GSYVHGAMQSPSLHKLVLGKYGALV 238


>BC022862-1|AAH22862.1|  346|Homo sapiens Ts translation elongation
           factor, mitochondrial protein.
          Length = 346

 Score =  130 bits (315), Expect = 4e-30
 Identities = 86/226 (38%), Positives = 121/226 (53%), Gaps = 27/226 (11%)
 Frame = +2

Query: 128 HTSPAYKAAESS--LLAKLRKKTGYTIANCKKALEMHNNDADKAETWLHEQAQAMGWAKA 301
           +  P   A+ SS  LL KLR+KTGY+  NCKKALE    D  +AE WLH++AQ  GW+KA
Sbjct: 35  YAGPRLSASASSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQKEGWSKA 94

Query: 302 TKLAGRTALQGLVAVKFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKF------ 463
            KL GR   +GL+ +  + N   LVE+NCETDFV++N KFQ +++  A+ +         
Sbjct: 95  AKLQGRKTKEGLIGLLQEGNTTVLVEVNCETDFVSRNLKFQLLVQQVALGTMMHCQTLKD 154

Query: 464 ---AHTKLQAKGPIT----------KME--LDSEQLGTLHAEGGKK--LSEILALFIGSV 592
              A++K+Q   P+            +E  L+S +L  L A   ++  L + LAL IG +
Sbjct: 155 QPSAYSKVQWLTPVNLALWEAEAGGSLEGFLNSSELSGLPAGPDREGSLKDQLALAIGKL 214

Query: 593 GENAVLRRAECWKANSEDVKIAGYTHPA--PXXXXXXXXGKYGALL 724
           GEN +L+RA  W        +  Y H A           GKYGAL+
Sbjct: 215 GENMILKRA-AWVKVPSGFYVGSYVHGAMQSPSLHKLVLGKYGALV 259


>Y18880-1|CAB56154.1|  715|Homo sapiens midline 2 protein protein.
          Length = 715

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 23/75 (30%), Positives = 38/75 (50%)
 Frame = +2

Query: 104 IFQLIRRIHTSPAYKAAESSLLAKLRKKTGYTIANCKKALEMHNNDADKAETWLHEQAQA 283
           + ++I++     A K  E+ ++ KLRK     +ANC++ LE      ++AE  L E  QA
Sbjct: 269 LVEIIQQRKQMIAVKIKETKVM-KLRK-LAQQVANCRQCLERSTVLINQAEHILKENDQA 326

Query: 284 MGWAKATKLAGRTAL 328
                A  +A R A+
Sbjct: 327 RFLQSAKNIAERVAM 341


>BT006663-1|AAP35309.1|  685|Homo sapiens midline 2 protein.
          Length = 685

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 23/75 (30%), Positives = 38/75 (50%)
 Frame = +2

Query: 104 IFQLIRRIHTSPAYKAAESSLLAKLRKKTGYTIANCKKALEMHNNDADKAETWLHEQAQA 283
           + ++I++     A K  E+ ++ KLRK     +ANC++ LE      ++AE  L E  QA
Sbjct: 269 LVEIIQQRKQMIAVKIKETKVM-KLRK-LAQQVANCRQCLERSTVLINQAEHILKENDQA 326

Query: 284 MGWAKATKLAGRTAL 328
                A  +A R A+
Sbjct: 327 RFLQSAKNIAERVAM 341


>BC017707-1|AAH17707.1|  685|Homo sapiens midline 2 protein.
          Length = 685

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 23/75 (30%), Positives = 38/75 (50%)
 Frame = +2

Query: 104 IFQLIRRIHTSPAYKAAESSLLAKLRKKTGYTIANCKKALEMHNNDADKAETWLHEQAQA 283
           + ++I++     A K  E+ ++ KLRK     +ANC++ LE      ++AE  L E  QA
Sbjct: 269 LVEIIQQRKQMIAVKIKETKVM-KLRK-LAQQVANCRQCLERSTVLINQAEHILKENDQA 326

Query: 284 MGWAKATKLAGRTAL 328
                A  +A R A+
Sbjct: 327 RFLQSAKNIAERVAM 341


>AY625004-1|AAT48105.1|  685|Homo sapiens TRIM1 beta protein.
          Length = 685

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 23/75 (30%), Positives = 38/75 (50%)
 Frame = +2

Query: 104 IFQLIRRIHTSPAYKAAESSLLAKLRKKTGYTIANCKKALEMHNNDADKAETWLHEQAQA 283
           + ++I++     A K  E+ ++ KLRK     +ANC++ LE      ++AE  L E  QA
Sbjct: 269 LVEIIQQRKQMIAVKIKETKVM-KLRK-LAQQVANCRQCLERSTVLINQAEHILKENDQA 326

Query: 284 MGWAKATKLAGRTAL 328
                A  +A R A+
Sbjct: 327 RFLQSAKNIAERVAM 341


>AL109946-4|CAO72054.1|  685|Homo sapiens midline 2 protein.
          Length = 685

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 23/75 (30%), Positives = 38/75 (50%)
 Frame = +2

Query: 104 IFQLIRRIHTSPAYKAAESSLLAKLRKKTGYTIANCKKALEMHNNDADKAETWLHEQAQA 283
           + ++I++     A K  E+ ++ KLRK     +ANC++ LE      ++AE  L E  QA
Sbjct: 269 LVEIIQQRKQMIAVKIKETKVM-KLRK-LAQQVANCRQCLERSTVLINQAEHILKENDQA 326

Query: 284 MGWAKATKLAGRTAL 328
                A  +A R A+
Sbjct: 327 RFLQSAKNIAERVAM 341


>AL109946-3|CAO72053.1|  715|Homo sapiens midline 2 protein.
          Length = 715

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 23/75 (30%), Positives = 38/75 (50%)
 Frame = +2

Query: 104 IFQLIRRIHTSPAYKAAESSLLAKLRKKTGYTIANCKKALEMHNNDADKAETWLHEQAQA 283
           + ++I++     A K  E+ ++ KLRK     +ANC++ LE      ++AE  L E  QA
Sbjct: 269 LVEIIQQRKQMIAVKIKETKVM-KLRK-LAQQVANCRQCLERSTVLINQAEHILKENDQA 326

Query: 284 MGWAKATKLAGRTAL 328
                A  +A R A+
Sbjct: 327 RFLQSAKNIAERVAM 341


>AL034399-3|CAI42074.1|  685|Homo sapiens midline 2 protein.
          Length = 685

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 23/75 (30%), Positives = 38/75 (50%)
 Frame = +2

Query: 104 IFQLIRRIHTSPAYKAAESSLLAKLRKKTGYTIANCKKALEMHNNDADKAETWLHEQAQA 283
           + ++I++     A K  E+ ++ KLRK     +ANC++ LE      ++AE  L E  QA
Sbjct: 269 LVEIIQQRKQMIAVKIKETKVM-KLRK-LAQQVANCRQCLERSTVLINQAEHILKENDQA 326

Query: 284 MGWAKATKLAGRTAL 328
                A  +A R A+
Sbjct: 327 RFLQSAKNIAERVAM 341


>AL034399-2|CAI42073.1|  715|Homo sapiens midline 2 protein.
          Length = 715

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 23/75 (30%), Positives = 38/75 (50%)
 Frame = +2

Query: 104 IFQLIRRIHTSPAYKAAESSLLAKLRKKTGYTIANCKKALEMHNNDADKAETWLHEQAQA 283
           + ++I++     A K  E+ ++ KLRK     +ANC++ LE      ++AE  L E  QA
Sbjct: 269 LVEIIQQRKQMIAVKIKETKVM-KLRK-LAQQVANCRQCLERSTVLINQAEHILKENDQA 326

Query: 284 MGWAKATKLAGRTAL 328
                A  +A R A+
Sbjct: 327 RFLQSAKNIAERVAM 341


>AF196481-1|AAF07341.1|  685|Homo sapiens RING finger protein
           protein.
          Length = 685

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 23/75 (30%), Positives = 38/75 (50%)
 Frame = +2

Query: 104 IFQLIRRIHTSPAYKAAESSLLAKLRKKTGYTIANCKKALEMHNNDADKAETWLHEQAQA 283
           + ++I++     A K  E+ ++ KLRK     +ANC++ LE      ++AE  L E  QA
Sbjct: 269 LVEIIQQRKQMIAVKIKETKVM-KLRK-LAQQVANCRQCLERSTVLINQAEHILKENDQA 326

Query: 284 MGWAKATKLAGRTAL 328
                A  +A R A+
Sbjct: 327 RFLQSAKNIAERVAM 341


>AK131308-1|BAD18474.1|  891|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16287 fis, clone OCBBF2008144, moderately
           similar to Zinc finger protein 91. ).
          Length = 891

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -3

Query: 199 CVARFFPEFSKQRRFSCFIRWTCMNSSNQLENHKNTLHSSKSFLC 65
           C+AR     + Q+ + C +     N S  L NHK      K F C
Sbjct: 596 CLARHLRIHTGQKPYKCNVCGKVFNDSGNLSNHKRIHTGEKPFQC 640


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,263,708
Number of Sequences: 237096
Number of extensions: 2473345
Number of successful extensions: 5288
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5284
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8959138240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)