Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29m19
(747 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78198-4|CAB01570.1| 316|Caenorhabditis elegans Hypothetical pr... 133 1e-31
D87850-1|BAA13470.1| 316|Caenorhabditis elegans elongation fact... 133 1e-31
CU457740-5|CAM36335.1| 361|Caenorhabditis elegans Hypothetical ... 32 0.50
Z93398-7|CAD90188.2| 4955|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z92788-7|CAD90177.2| 4955|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z92788-6|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical pr... 29 2.6
AL031637-4|CAD90184.2| 4955|Caenorhabditis elegans Hypothetical ... 29 2.6
AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical ... 29 2.6
AJ505905-1|CAD44516.1| 3522|Caenorhabditis elegans VAB-10B prote... 29 2.6
AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B prote... 29 2.6
AF478687-1|AAL78657.1| 776|Caenorhabditis elegans systemic RNAi... 29 4.6
AF101305-9|AAF98593.3| 776|Caenorhabditis elegans Systemic rna ... 29 4.6
>Z78198-4|CAB01570.1| 316|Caenorhabditis elegans Hypothetical
protein F55C5.5 protein.
Length = 316
Score = 133 bits (321), Expect = 1e-31
Identities = 78/198 (39%), Positives = 115/198 (58%), Gaps = 1/198 (0%)
Frame = +2
Query: 146 KAAESSLLAKLRKKTGYTIANCKKAL-EMHNNDADKAETWLHEQAQAMGWAKATKLAGRT 322
K ++ +L+A LRKKTGY+ NC+KAL + ND D A WL E A GWAKA KL R
Sbjct: 24 KVSKEALMA-LRKKTGYSYVNCRKALIQFGENDMDSAVKWLKEAAAKEGWAKAAKLGTRV 82
Query: 323 ALQGLVAVKFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFAHTKLQAKGPITK 502
GLV+V D + A+VEL+CETDFVA++ F+ ++ + I++ A K Q+ +K
Sbjct: 83 TSNGLVSVVTDNSTAAVVELSCETDFVARSGAFKDLLSN--ISNSVLAKAKPQSISSGSK 140
Query: 503 MELDSEQLGTLHAEGGKKLSEILALFIGSVGENAVLRRAECWKANSEDVKIAGYTHPAPX 682
++ + LG L GK + E+L+L IG +GEN +RR + +KA E + G +HP
Sbjct: 141 LQEFTYDLGDLTDSDGKNMREVLSLSIGKLGENMTVRRVKAFKA-PEGTTLFGASHP-KD 198
Query: 683 XXXXXXXGKYGALLAYKQ 736
G++ +L+A Q
Sbjct: 199 GTDDIPMGRFISLIALNQ 216
>D87850-1|BAA13470.1| 316|Caenorhabditis elegans elongation factor
Ts homologue protein.
Length = 316
Score = 133 bits (321), Expect = 1e-31
Identities = 78/198 (39%), Positives = 115/198 (58%), Gaps = 1/198 (0%)
Frame = +2
Query: 146 KAAESSLLAKLRKKTGYTIANCKKAL-EMHNNDADKAETWLHEQAQAMGWAKATKLAGRT 322
K ++ +L+A LRKKTGY+ NC+KAL + ND D A WL E A GWAKA KL R
Sbjct: 24 KVSKEALMA-LRKKTGYSYVNCRKALIQFGENDMDSAVKWLKEAAAKEGWAKAAKLGTRV 82
Query: 323 ALQGLVAVKFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFAHTKLQAKGPITK 502
GLV+V D + A+VEL+CETDFVA++ F+ ++ + I++ A K Q+ +K
Sbjct: 83 TSNGLVSVVTDNSTAAVVELSCETDFVARSGAFKDLLSN--ISNSVLAKAKPQSISSGSK 140
Query: 503 MELDSEQLGTLHAEGGKKLSEILALFIGSVGENAVLRRAECWKANSEDVKIAGYTHPAPX 682
++ + LG L GK + E+L+L IG +GEN +RR + +KA E + G +HP
Sbjct: 141 LQEFTYDLGDLTDSDGKNMREVLSLSIGKLGENMTVRRVKAFKA-PEGTTLFGASHP-KD 198
Query: 683 XXXXXXXGKYGALLAYKQ 736
G++ +L+A Q
Sbjct: 199 GTDDIPMGRFISLIALNQ 216
>CU457740-5|CAM36335.1| 361|Caenorhabditis elegans Hypothetical
protein C50E10.5 protein.
Length = 361
Score = 31.9 bits (69), Expect = 0.50
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = -1
Query: 384 LSSTRAPWFLSNLTATNPWRAVLPANLVAFAHPIA----WACSWSHVSALSASLLCISNA 217
L T A WF+ + T+ WR + A L+ F H I W C ++H++ ++C
Sbjct: 148 LERTFASWFILDYERTSRWR-IFRA-LLIFQHGIIFVMHWFCFFNHINFFLGFIVCF--L 203
Query: 216 FLQLAIV 196
F+ LA+V
Sbjct: 204 FIILAVV 210
>Z93398-7|CAD90188.2| 4955|Caenorhabditis elegans Hypothetical protein
ZK1151.1c protein.
Length = 4955
Score = 29.5 bits (63), Expect = 2.6
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Frame = +2
Query: 173 KLRKKTGYTIANCKKALEMHNND-ADKAETWLHEQAQAMGWAKA-TKLAGRTALQGLVAV 346
+LRK+ G +N +KA M +ND D+ T +++ G KA KL G L+ +
Sbjct: 2249 ELRKELGELESNVEKASAMSSNDIGDQLATLDSLKSRFGGVDKALEKLKG--ILEATEEL 2306
Query: 347 KFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFAHTKLQAKGPITKMELDSEQL 526
+ D + A ++ ET K D+ ++ IE+ K A Q +G + +LD E +
Sbjct: 2307 EVDATNRAEIQEQLETT-QKKADELERKIENV-----KKAALNAQNEGLELEKKLD-ELI 2359
Query: 527 GTLH-AEGGKKLSEILA 574
GT++ AE +L+ +A
Sbjct: 2360 GTVNSAENELELAAPIA 2376
>Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical protein
ZK1151.1b protein.
Length = 4944
Score = 29.5 bits (63), Expect = 2.6
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Frame = +2
Query: 173 KLRKKTGYTIANCKKALEMHNND-ADKAETWLHEQAQAMGWAKA-TKLAGRTALQGLVAV 346
+LRK+ G +N +KA M +ND D+ T +++ G KA KL G L+ +
Sbjct: 2249 ELRKELGELESNVEKASAMSSNDIGDQLATLDSLKSRFGGVDKALEKLKG--ILEATEEL 2306
Query: 347 KFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFAHTKLQAKGPITKMELDSEQL 526
+ D + A ++ ET K D+ ++ IE+ K A Q +G + +LD E +
Sbjct: 2307 EVDATNRAEIQEQLETT-QKKADELERKIENV-----KKAALNAQNEGLELEKKLD-ELI 2359
Query: 527 GTLH-AEGGKKLSEILA 574
GT++ AE +L+ +A
Sbjct: 2360 GTVNSAENELELAAPIA 2376
>Z92788-7|CAD90177.2| 4955|Caenorhabditis elegans Hypothetical protein
ZK1151.1c protein.
Length = 4955
Score = 29.5 bits (63), Expect = 2.6
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Frame = +2
Query: 173 KLRKKTGYTIANCKKALEMHNND-ADKAETWLHEQAQAMGWAKA-TKLAGRTALQGLVAV 346
+LRK+ G +N +KA M +ND D+ T +++ G KA KL G L+ +
Sbjct: 2249 ELRKELGELESNVEKASAMSSNDIGDQLATLDSLKSRFGGVDKALEKLKG--ILEATEEL 2306
Query: 347 KFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFAHTKLQAKGPITKMELDSEQL 526
+ D + A ++ ET K D+ ++ IE+ K A Q +G + +LD E +
Sbjct: 2307 EVDATNRAEIQEQLETT-QKKADELERKIENV-----KKAALNAQNEGLELEKKLD-ELI 2359
Query: 527 GTLH-AEGGKKLSEILA 574
GT++ AE +L+ +A
Sbjct: 2360 GTVNSAENELELAAPIA 2376
>Z92788-6|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical protein
ZK1151.1b protein.
Length = 4944
Score = 29.5 bits (63), Expect = 2.6
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Frame = +2
Query: 173 KLRKKTGYTIANCKKALEMHNND-ADKAETWLHEQAQAMGWAKA-TKLAGRTALQGLVAV 346
+LRK+ G +N +KA M +ND D+ T +++ G KA KL G L+ +
Sbjct: 2249 ELRKELGELESNVEKASAMSSNDIGDQLATLDSLKSRFGGVDKALEKLKG--ILEATEEL 2306
Query: 347 KFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFAHTKLQAKGPITKMELDSEQL 526
+ D + A ++ ET K D+ ++ IE+ K A Q +G + +LD E +
Sbjct: 2307 EVDATNRAEIQEQLETT-QKKADELERKIENV-----KKAALNAQNEGLELEKKLD-ELI 2359
Query: 527 GTLH-AEGGKKLSEILA 574
GT++ AE +L+ +A
Sbjct: 2360 GTVNSAENELELAAPIA 2376
>AL031637-4|CAD90184.2| 4955|Caenorhabditis elegans Hypothetical
protein ZK1151.1c protein.
Length = 4955
Score = 29.5 bits (63), Expect = 2.6
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Frame = +2
Query: 173 KLRKKTGYTIANCKKALEMHNND-ADKAETWLHEQAQAMGWAKA-TKLAGRTALQGLVAV 346
+LRK+ G +N +KA M +ND D+ T +++ G KA KL G L+ +
Sbjct: 2249 ELRKELGELESNVEKASAMSSNDIGDQLATLDSLKSRFGGVDKALEKLKG--ILEATEEL 2306
Query: 347 KFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFAHTKLQAKGPITKMELDSEQL 526
+ D + A ++ ET K D+ ++ IE+ K A Q +G + +LD E +
Sbjct: 2307 EVDATNRAEIQEQLETT-QKKADELERKIENV-----KKAALNAQNEGLELEKKLD-ELI 2359
Query: 527 GTLH-AEGGKKLSEILA 574
GT++ AE +L+ +A
Sbjct: 2360 GTVNSAENELELAAPIA 2376
>AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical
protein ZK1151.1b protein.
Length = 4944
Score = 29.5 bits (63), Expect = 2.6
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Frame = +2
Query: 173 KLRKKTGYTIANCKKALEMHNND-ADKAETWLHEQAQAMGWAKA-TKLAGRTALQGLVAV 346
+LRK+ G +N +KA M +ND D+ T +++ G KA KL G L+ +
Sbjct: 2249 ELRKELGELESNVEKASAMSSNDIGDQLATLDSLKSRFGGVDKALEKLKG--ILEATEEL 2306
Query: 347 KFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFAHTKLQAKGPITKMELDSEQL 526
+ D + A ++ ET K D+ ++ IE+ K A Q +G + +LD E +
Sbjct: 2307 EVDATNRAEIQEQLETT-QKKADELERKIENV-----KKAALNAQNEGLELEKKLD-ELI 2359
Query: 527 GTLH-AEGGKKLSEILA 574
GT++ AE +L+ +A
Sbjct: 2360 GTVNSAENELELAAPIA 2376
>AJ505905-1|CAD44516.1| 3522|Caenorhabditis elegans VAB-10B protein
protein.
Length = 3522
Score = 29.5 bits (63), Expect = 2.6
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Frame = +2
Query: 173 KLRKKTGYTIANCKKALEMHNND-ADKAETWLHEQAQAMGWAKA-TKLAGRTALQGLVAV 346
+LRK+ G +N +KA M +ND D+ T +++ G KA KL G L+ +
Sbjct: 2249 ELRKELGELESNVEKASAMSSNDIGDQLATLDSLKSRFGGVDKALEKLKG--ILEATEEL 2306
Query: 347 KFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFAHTKLQAKGPITKMELDSEQL 526
+ D + A ++ ET K D+ ++ IE+ K A Q +G + +LD E +
Sbjct: 2307 EVDATNRAEIQEQLETT-QKKADELERKIENV-----KKAALNAQNEGLELEKKLD-ELI 2359
Query: 527 GTLH-AEGGKKLSEILA 574
GT++ AE +L+ +A
Sbjct: 2360 GTVNSAENELELAAPIA 2376
>AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B protein
protein.
Length = 4944
Score = 29.5 bits (63), Expect = 2.6
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Frame = +2
Query: 173 KLRKKTGYTIANCKKALEMHNND-ADKAETWLHEQAQAMGWAKA-TKLAGRTALQGLVAV 346
+LRK+ G +N +KA M +ND D+ T +++ G KA KL G L+ +
Sbjct: 2249 ELRKELGELESNVEKASAMSSNDIGDQLATLDSLKSRFGGVDKALEKLKG--ILEATEEL 2306
Query: 347 KFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFAHTKLQAKGPITKMELDSEQL 526
+ D + A ++ ET K D+ ++ IE+ K A Q +G + +LD E +
Sbjct: 2307 EVDATNRAEIQEQLETT-QKKADELERKIENV-----KKAALNAQNEGLELEKKLD-ELI 2359
Query: 527 GTLH-AEGGKKLSEILA 574
GT++ AE +L+ +A
Sbjct: 2360 GTVNSAENELELAAPIA 2376
>AF478687-1|AAL78657.1| 776|Caenorhabditis elegans systemic RNAi
enabling proteinSID-1 protein.
Length = 776
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = -3
Query: 403 HKISFTVEFHQSTMVLVKLNSYQPLEGRPAS*FSCLCPSHCLGLFMEPCLSLICIIIM 230
H+ S ++ T++ V + + L+ ++ + +CPS F PC+ +IC ++M
Sbjct: 507 HEYSHVFGTYECTLLDVTIGVFMVLQSIASATYH-ICPSDVAFQFDTPCIQVICGLLM 563
>AF101305-9|AAF98593.3| 776|Caenorhabditis elegans Systemic rna
interference defectiveprotein 1 protein.
Length = 776
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = -3
Query: 403 HKISFTVEFHQSTMVLVKLNSYQPLEGRPAS*FSCLCPSHCLGLFMEPCLSLICIIIM 230
H+ S ++ T++ V + + L+ ++ + +CPS F PC+ +IC ++M
Sbjct: 507 HEYSHVFGTYECTLLDVTIGVFMVLQSIASATYH-ICPSDVAFQFDTPCIQVICGLLM 563
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,611,599
Number of Sequences: 27780
Number of extensions: 376965
Number of successful extensions: 1027
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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