Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29m13
(752 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 33 0.033
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac... 29 0.54
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 28 1.2
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 27 3.8
SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces ... 27 3.8
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo... 26 5.0
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po... 26 5.0
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces... 26 6.6
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p... 25 8.8
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 33.5 bits (73), Expect = 0.033
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +1
Query: 241 VLP-NPVFSELPQNYRLSEEQKSFYWENGYLVIKELIDFTSLYSYKQRFLQICKGIVDSP 417
V+P PVF+ LP +YR K Y + +LV ++ +S Y + Q L+ K +
Sbjct: 27 VVPIQPVFAPLPPDYR--SLYKKLYGQGAFLVDNP-VEASSPYDFSQPILKFGKLPIKQV 83
Query: 418 VMIVKEQALFEKNLKPEEYINKLQE 492
+ + Q KNL + N++QE
Sbjct: 84 LRDNESQQKDRKNLPRNQKSNEIQE 108
>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 446
Score = 29.5 bits (63), Expect = 0.54
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -2
Query: 244 ELLNLLKAFCSLN*YTF*LIKSNFQTKNYSHRTR-KFFVQCRYLRNTHN 101
E L + A+C+ + + L+ FQ++ SH+TR K F +C Y ++N
Sbjct: 63 EFLPRVTAYCTCDTFRVDLLFKFFQSRRSSHKTRPKQFDECIYSPYSYN 111
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 28.3 bits (60), Expect = 1.2
Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Frame = +1
Query: 238 KVLPNPVFSELPQNYRLSE--EQKSFYWENGYLVIKELIDFTSLYSYKQRFLQICKGIVD 411
++L P FS RL++ + F ++ + + + SL S++Q + +
Sbjct: 95 QLLRQPSFSSSENTDRLADLLRVRRFIYQKAW----KSYENPSLSSHRQYQIPTPIQLAS 150
Query: 412 SPVMIVKEQALFEKNLKPEEY-----INKLQEILYDDVFMTYGEHPRLLDVISQFIGDDI 576
S ++ K ++ K L EY IN +Q L + + +HP+ +D +++FIG +
Sbjct: 151 SASLLKKVESFIAKELLLFEYLDGHQINFIQIFLMGLLRVQNIQHPQTIDELAEFIGHEE 210
Query: 577 TAI 585
++I
Sbjct: 211 SSI 213
>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 718
Score = 26.6 bits (56), Expect = 3.8
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 698 WTMSIRIMAVCMSFQSL 748
W ++I +M +C+ FQSL
Sbjct: 78 WQLNIPVMGICLGFQSL 94
>SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 144
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 397 KGIVDSPVMIVKEQALFEKNLKPEEYINK 483
K I ++ K + F KN++PEEYI K
Sbjct: 33 KRIKQDLILKAKTKKHFYKNVRPEEYIKK 61
>SPBC1718.02 |hop1||linear element associated protein
Hop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 418 VMIVKEQALFEKNLKPEEYINK-LQEILYDDVFMT 519
+MI KE +LF+ K + + K LQ + YD++ T
Sbjct: 236 IMINKESSLFDSQEKIDSQLEKFLQPLKYDEIGST 270
>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 447 KKCLFFDNHNRAVNYSFAYLQKALFV 370
KKCL D V+ SF Y++ A FV
Sbjct: 157 KKCLILDLDETLVHSSFKYIEPADFV 182
>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 815
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/61 (22%), Positives = 30/61 (49%)
Frame = +1
Query: 424 IVKEQALFEKNLKPEEYINKLQEILYDDVFMTYGEHPRLLDVISQFIGDDITAIHSMFIN 603
IV+E + E L +E+I+ +Q+ Y + YG P+ + V+ + + + F+
Sbjct: 405 IVRE--IKEVELYAKEFISGIQQASYPEAAKHYGRDPKQMGVVVEKLNSQCLEMVYSFVG 462
Query: 604 K 606
+
Sbjct: 463 E 463
>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 8.8
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = +1
Query: 433 EQALFEKNLKPEEYINKLQEILYDDVFMTYGEHPRLLDVISQFIGDDITAIHSMF-INKP 609
++ + E+++ +Y + YD ++ G R +D+ GD I I + +NK
Sbjct: 224 QELICERSITRMDYPIRTLSFSYDSRYLASGSEDRYVDIADTKTGDQIWKIPTNGPLNK- 282
Query: 610 PGTARHPPHQDLFYFPIRP 666
A HP L Y P
Sbjct: 283 --VAWHPTKHILAYAVSEP 299
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,167,944
Number of Sequences: 5004
Number of extensions: 66957
Number of successful extensions: 157
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -