Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29m13
         (752 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0384 - 8294914-8297817                                           29   4.0  
02_01_0138 + 999809-999821,1000456-1001341,1001424-1003221,10037...    29   5.2  
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485...    28   9.2  
02_04_0092 + 19655747-19655825,19656362-19656567,19656990-196570...    28   9.2  

>09_02_0384 - 8294914-8297817
          Length = 967

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
 Frame = -2

Query: 298 VPPTICSSVAALRTLD--*VELLNLLKAFCSL 209
           +PP++C+S+AALR LD    ++  L +  CSL
Sbjct: 552 IPPSLCASMAALRYLDLSWTQIEQLPREVCSL 583


>02_01_0138 +
           999809-999821,1000456-1001341,1001424-1003221,
           1003716-1003805,1004034-1004111,1004513-1004518,
           1004849-1004958,1005174-1005369
          Length = 1058

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +1

Query: 373 KQRFLQICKGIVDSPVMIVKEQALFEKNLKPEEYINKLQEI-LYD 504
           + R LQIC GI  SPV +   Q   ++N    E+I+ L+E+ +YD
Sbjct: 339 QMRSLQICSGITASPVQVSTSQV--DQN----EWISSLRELTIYD 377


>05_03_0235 -
           10747649-10748118,10748226-10748314,10748477-10748574,
           10748934-10749046,10749107-10749200,10749557-10749589,
           10749734-10749851,10750110-10750210,10751036-10751233,
           10751337-10751471,10751752-10751830,10753650-10753738,
           10753835-10753987,10754100-10754285
          Length = 651

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
 Frame = -2

Query: 571 HHQ*TARSHPIAWDV---HHRS*THHH 500
           HHQ     HP AWDV   HH    H H
Sbjct: 561 HHQRRRHHHPPAWDVEGHHHDRQQHSH 587


>02_04_0092 +
           19655747-19655825,19656362-19656567,19656990-19657096,
           19657189-19657291,19657699-19657881,19657972-19658094
          Length = 266

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 367 SYKQRFLQICKGIVDSPVMIVKEQALFEKNLKPEEY-INKLQEILYDDVF 513
           S    F    KG   SP+ I+K+ A++   L+P E         + D+VF
Sbjct: 43  SLSPNFTTCSKGTYQSPINILKDDAVYNPKLEPLEMDYTAANTTIVDNVF 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,568,130
Number of Sequences: 37544
Number of extensions: 401493
Number of successful extensions: 684
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)