Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29m13
(752 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82287-6|CAB05318.1| 312|Caenorhabditis elegans Hypothetical pr... 131 6e-31
Z80223-9|CAB02322.1| 312|Caenorhabditis elegans Hypothetical pr... 131 6e-31
Z82287-5|CAB05315.1| 328|Caenorhabditis elegans Hypothetical pr... 125 3e-29
AL110479-7|CAB54355.1| 288|Caenorhabditis elegans Hypothetical ... 48 7e-06
Z99281-46|CAB54455.3| 795|Caenorhabditis elegans Hypothetical p... 31 0.66
U40028-2|AAY55874.1| 1200|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z66495-6|CAA91275.2| 547|Caenorhabditis elegans Hypothetical pr... 28 8.2
>Z82287-6|CAB05318.1| 312|Caenorhabditis elegans Hypothetical
protein ZK550.6 protein.
Length = 312
Score = 131 bits (316), Expect = 6e-31
Identities = 66/165 (40%), Positives = 103/165 (62%), Gaps = 10/165 (6%)
Frame = +1
Query: 286 LSEEQKSFYWENGYLVIKELIDFTSLYSYKQRFLQICKGIVDSP--VMIVKEQALFEKNL 459
LS EQ+ FY +NGYL+I+ + L ++QRF IC+ V +P + ++K+ ++ +
Sbjct: 16 LSAEQRRFYEKNGYLLIRNCVPQYELNRFRQRFQDICEKKVKAPENMTVMKDISIAKSEF 75
Query: 460 KP-EEYINKLQEILYDDVFMTYGEHPRLLDVISQFIGD---DITAIHSMFINKPPG---- 615
K E+ I K+Q+ D V Y ++P ++DV+ IG+ ++ A+H+M INKPP
Sbjct: 76 KDGEKAITKIQDFADDPVLFEYCKYPGVVDVVKDLIGNPKSNLMAMHTMLINKPPDNGKL 135
Query: 616 TARHPPHQDLFYFPIRPVDKIIGSWTAVDHVNKDNGCLYVIPKSH 750
T+RHP HQDL YFP RP D I +WTA++ + + NGCL V+P +H
Sbjct: 136 TSRHPMHQDLQYFPFRPADFICCAWTAMEKITRANGCLVVVPGTH 180
>Z80223-9|CAB02322.1| 312|Caenorhabditis elegans Hypothetical
protein ZK550.6 protein.
Length = 312
Score = 131 bits (316), Expect = 6e-31
Identities = 66/165 (40%), Positives = 103/165 (62%), Gaps = 10/165 (6%)
Frame = +1
Query: 286 LSEEQKSFYWENGYLVIKELIDFTSLYSYKQRFLQICKGIVDSP--VMIVKEQALFEKNL 459
LS EQ+ FY +NGYL+I+ + L ++QRF IC+ V +P + ++K+ ++ +
Sbjct: 16 LSAEQRRFYEKNGYLLIRNCVPQYELNRFRQRFQDICEKKVKAPENMTVMKDISIAKSEF 75
Query: 460 KP-EEYINKLQEILYDDVFMTYGEHPRLLDVISQFIGD---DITAIHSMFINKPPG---- 615
K E+ I K+Q+ D V Y ++P ++DV+ IG+ ++ A+H+M INKPP
Sbjct: 76 KDGEKAITKIQDFADDPVLFEYCKYPGVVDVVKDLIGNPKSNLMAMHTMLINKPPDNGKL 135
Query: 616 TARHPPHQDLFYFPIRPVDKIIGSWTAVDHVNKDNGCLYVIPKSH 750
T+RHP HQDL YFP RP D I +WTA++ + + NGCL V+P +H
Sbjct: 136 TSRHPMHQDLQYFPFRPADFICCAWTAMEKITRANGCLVVVPGTH 180
>Z82287-5|CAB05315.1| 328|Caenorhabditis elegans Hypothetical
protein ZK550.5 protein.
Length = 328
Score = 125 bits (302), Expect = 3e-29
Identities = 65/162 (40%), Positives = 97/162 (59%), Gaps = 10/162 (6%)
Frame = +1
Query: 286 LSEEQKSFYWENGYLVIKELIDFTSLYSYKQRFLQICKGIVDSPV-MIVKEQALFEKNLK 462
LS EQK FY +NG+L+++ + L Y+ +F IC+ V P M+V + K +
Sbjct: 32 LSVEQKQFYQKNGFLLVRGCVAKDELKKYENQFNAICERKVKPPPNMLVMKDVSIAKKVT 91
Query: 463 PE--EYINKLQEILYDDVFMTYGEHPRLLDVISQFIGDD---ITAIHSMFINKPPGT--- 618
P+ + I K+Q+ + V +Y E+ ++ DV+ IG ITA+H+M INKPP T
Sbjct: 92 PDSIDTITKVQDFTDEPVLFSYCENKKVTDVVRDLIGSPDTRITAMHTMLINKPPDTGAL 151
Query: 619 -ARHPPHQDLFYFPIRPVDKIIGSWTAVDHVNKDNGCLYVIP 741
+RHP HQDL YFP RP + + +WTA++ +NK NGCL V+P
Sbjct: 152 TSRHPMHQDLIYFPWRPEELTVCAWTAMEKINKQNGCLQVVP 193
>AL110479-7|CAB54355.1| 288|Caenorhabditis elegans Hypothetical
protein Y105C5B.9 protein.
Length = 288
Score = 48.0 bits (109), Expect = 7e-06
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Frame = +1
Query: 448 EKNLKPEEYINKLQEILY--DDVFMTYGEHPRLLDVISQFIGDDITAIHSMFINKPPGTA 621
E + ++ +NK+ L+ D F + ++ ++ + + + SM+I K P
Sbjct: 84 ELTVPKDKALNKIGHGLHFLDPTFEKMTFNSKIQNIFKEIGYQEPGVVQSMYIFKQPKIG 143
Query: 622 RH-PPHQDLFYFPIRPVDKIIGSWTAVDHVNKDNGCLYVIPKSH 750
H D + + P+D + G W A+D + +NGCL IP SH
Sbjct: 144 GAVTDHVDSTFLRVDPIDHLTGVWIAIDEASVENGCLSFIPGSH 187
>Z99281-46|CAB54455.3| 795|Caenorhabditis elegans Hypothetical
protein Y57G11C.32 protein.
Length = 795
Score = 31.5 bits (68), Expect = 0.66
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +1
Query: 217 KMPLKGLKVLPNPVFSELPQNYRLSEEQKSFYWENGYLVI 336
++PL+ +VLPNP++ E P + +EE K+F GY+ I
Sbjct: 201 ELPLESDEVLPNPIYEE-PGDQSETEEVKAFREIFGYIQI 239
>U40028-2|AAY55874.1| 1200|Caenorhabditis elegans Hypothetical
protein T05A7.11 protein.
Length = 1200
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 469 EYINKLQEILYDDVFMTYGEHPRLLDVISQF 561
EY+ KL +IL++D T+G +P ++ Q+
Sbjct: 594 EYLTKLYDILFNDETFTFGSNPSSPFLVIQY 624
>Z66495-6|CAA91275.2| 547|Caenorhabditis elegans Hypothetical
protein C36A4.8 protein.
Length = 547
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Frame = +1
Query: 451 KNLKPEEYINKLQE--ILYDDVFMTYGEHPRLLDVISQFIGDDITAIHSMFINKPPGTAR 624
KN+ EEYIN L+E D++ + +L+ + QF+ ++I + F PP +
Sbjct: 203 KNVDIEEYINTLRENSTEIDEIDALF----QLMPTMRQFLRNNINQLMEKFHVAPPKKSE 258
Query: 625 HPPHQDLFYFPIRPVDKI 678
P ++ + + + ++ I
Sbjct: 259 KPANRRVSFASSQDLENI 276
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,435,304
Number of Sequences: 27780
Number of extensions: 373603
Number of successful extensions: 788
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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