Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29m09
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 91 1e-19
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 33 0.052
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 31 0.12
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 30 0.28
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 29 0.64
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 29 0.64
SPBC25H2.08c |mrs2||magnesium ion transporter Mrs2|Schizosacchar... 29 0.85
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 29 0.85
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 28 1.1
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch... 28 1.1
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 27 2.0
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch... 27 2.0
SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos... 27 2.6
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 27 2.6
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 2.6
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 27 2.6
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 4.5
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 26 4.5
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 26 4.5
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces... 26 4.5
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo... 26 4.5
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 26 4.5
SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 4.5
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 26 4.5
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch... 26 4.5
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.0
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p... 26 6.0
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po... 26 6.0
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 6.0
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 25 7.9
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb... 25 7.9
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 25 7.9
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz... 25 7.9
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 91.1 bits (216), Expect = 1e-19
Identities = 50/187 (26%), Positives = 95/187 (50%)
Frame = +1
Query: 109 MAEQVNQRIENMINELEQMRRTNLYTDEEIKEISQKRKEFEYHIQRRVKQKEDYVQYIAY 288
MAE+V +E + ELE + N++ +EI I + R+ FE + RR + D++ YI Y
Sbjct: 1 MAEKVQYYMEQSVPELEDLLEKNIFNRDEINNIIKTRRVFEEKLARRQVKLNDFLSYIQY 60
Query: 289 ELALLEDITTRRKKIQLTEKKKDLEYAIAQRLNQLFKRFIYKFQNEIEIYFEYIKFCKGV 468
E+ L R K++ +T K +YA +++ LF R KF ++ ++ +YI + + +
Sbjct: 61 EINLETLRAKRHKRLNITGKITISDYAGPRKVLFLFLRATNKFFGDVTLWLDYIHYAQKI 120
Query: 469 GFQQAISGIIGQMLQIHGDKPQMWLMASKWESLEQNNLENAKAFLLKGIQRNPDAEPLYL 648
+ I LQ H + ++W++A E N+ A+A + + ++ N + ++
Sbjct: 121 KAVNIVGKICVAALQKHPNNAELWVVACDHEFSINANVSAARALMNRALRLNQENPVIWA 180
Query: 649 ELFNIEL 669
F +EL
Sbjct: 181 AYFRLEL 187
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 32.7 bits (71), Expect = 0.052
Identities = 15/55 (27%), Positives = 32/55 (58%)
Frame = +1
Query: 112 AEQVNQRIENMINELEQMRRTNLYTDEEIKEISQKRKEFEYHIQRRVKQKEDYVQ 276
AEQ+++++E + ELE + T E++++ K + FE +Q ++++D Q
Sbjct: 81 AEQLSRKVELLEEELETNDKLLRETTEKMRQTDVKAEHFERRVQSLERERDDMEQ 135
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 31.5 bits (68), Expect = 0.12
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1
Query: 154 LEQMRRTNLYTDEEIKEISQKRKEFEYHIQRRVKQKEDYVQY 279
++QM TNL D+E S RK+++ I++R +ED ++
Sbjct: 1390 IKQMELTNLKKDQEANNSSDTRKKYDSIIKKRDSLREDLEKF 1431
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 30.3 bits (65), Expect = 0.28
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
Frame = +1
Query: 106 KMAEQVNQRIENMINELEQMRRTNLYTDEEIKEISQKRKEFEYHIQRRVKQKEDYVQYIA 285
K + N R++ + ELE +R N EI ++ ++ + I K+K+ + +
Sbjct: 492 KALAETNIRLQEVTKELETLRMKNSNDLNEIHDLREENEGLTLKIDSITKEKDRLINELE 551
Query: 286 YELALLE-DITTRRKKI-QLTEKKKDLEYAIAQRLNQLFKRFIYKFQNEIEIYFEYI 450
+ E +++ I + K KD E + N++ F YK N++ + E I
Sbjct: 552 QRIKSYEVNVSELNGTIDEYRNKLKDKE----ETYNEVMNAFQYK-DNDLRRFHESI 603
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 29.1 bits (62), Expect = 0.64
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +1
Query: 136 ENMINELEQMRRTNLYTDEEIKEISQKRKEFEYHIQRRVKQKEDYVQ 276
E + +L Q T L+TD+E K ++K E E + +R K+++ Y++
Sbjct: 1044 ERKVRDLLQKVMT-LHTDKEAKRKAKKAAEHERYHKRMQKEEQAYIE 1089
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 29.1 bits (62), Expect = 0.64
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Frame = +1
Query: 127 QRIENMINELEQMRRTNLYTDEEIKEISQKRKEFEYHIQRRVKQ----KEDYVQY---IA 285
Q + + +L++M + + DEE K +SQ++ + EY I Q E+Y ++ +
Sbjct: 629 QTLAQLHLQLDEMTQRLVSLDEESKAVSQRKLDLEYKINNSKTQLATATEEYHEHSKQLE 688
Query: 286 YELALLEDITTRRKKIQLTEK 348
E L + K + LTE+
Sbjct: 689 AEKQELSKLEDGLKSVNLTEE 709
>SPBC25H2.08c |mrs2||magnesium ion transporter
Mrs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 28.7 bits (61), Expect = 0.85
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 208 SQKRKEFEYHIQRRVKQKEDYVQYIAYELALLEDI 312
S + +F Y ++ R+KQK ++ YE+ LE I
Sbjct: 162 SHSQSQFIYELEGRLKQKSSDFGWLPYEMRALETI 196
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 28.7 bits (61), Expect = 0.85
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Frame = +1
Query: 400 RFIYKFQNEIEIYFEYIKF--CKGVGFQQAISGIIGQMLQIHGDKP-----QMWLMASKW 558
R + +N ++IY Y K KG F+ + + + G K +WL+ +K
Sbjct: 663 RALQLLENALKIYPHYDKLYMMKGQIFEDKEQIELARDAYLAGTKVCPYSIPLWLLLAKL 722
Query: 559 ESLEQNNLENAKAFLLKGIQRNPDAEPLYLELFNIEL 669
E E+ ++ A+ + +NP E L+LEL +EL
Sbjct: 723 E--EKQSVIRARVVFDRAKVKNPKNEFLWLELIKMEL 757
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 535 MWLMASKWESLEQNNLENAKAFLLKGIQRNPDAEPLYLELFNIE 666
+WL A K E N ++ K + K ++ NP + L+ E N+E
Sbjct: 344 LWLEAEKLE----NQAQHKKRIIKKALEFNPTSVSLWKEAVNLE 383
Score = 25.8 bits (54), Expect = 6.0
Identities = 17/97 (17%), Positives = 41/97 (42%)
Frame = +1
Query: 319 RRKKIQLTEKKKDLEYAIAQRLNQLFKRFIYKFQNEIEIYFEYIKFCKGVGFQQAISGII 498
+ +K+ L + + Y + + + ++ + ++ Y K K V I+
Sbjct: 542 KSEKLWLRAVELEKLYGTTESVCSILEKAVESCPKAEILWLLYAKERKNVNDIAGARNIL 601
Query: 499 GQMLQIHGDKPQMWLMASKWESLEQNNLENAKAFLLK 609
G+ + + + ++WL A + E + N E A+ L +
Sbjct: 602 GRAFEYNSNSEEIWLAAVRIEFVNNEN-ERARKLLAR 637
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +1
Query: 127 QRIENMINELEQMRRTNLYTDEEIKEISQKRKEFEYHIQRRVKQKEDYVQYIAYELALLE 306
Q+I ELE + R +E+ + +KRK+ I + K +E+ + + L+ E
Sbjct: 333 QQIRGKAKELETLLRGKRKRLDEVLSVYEKRKDEHQSISKDFKSQEELISSLTTGLSTTE 392
>SPBC577.05c |rec27|mug41|meiotic recombination protein
Rec27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 28.3 bits (60), Expect = 1.1
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Frame = +1
Query: 115 EQVNQRIENMINELEQMRRTNLYTDEE--IKEISQ---KRKEFEYHIQRRVKQKEDYVQY 279
+ + +R++ +++E +TN+ +++ IK++SQ K KEFE ++KQ +
Sbjct: 37 KNIERRVKKY-DQIESEYKTNIENEKKAFIKDVSQVQQKIKEFEIQKANQIKQLNEEKLS 95
Query: 280 IAYELALLEDITTRRKKIQLTEK 348
I LE I R + +Q EK
Sbjct: 96 IEARKQQLE-IEIRNQLLQYAEK 117
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.5 bits (58), Expect = 2.0
Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 1/113 (0%)
Frame = +1
Query: 106 KMAEQVNQRIENMINELEQMRRTNLYTDEEIKEISQKRKEFEYHIQRRVKQKEDYVQYIA 285
K E + ++ N ELE ++ N E+ +KRK++E + + D QY
Sbjct: 514 KEVEALQLQLVNSSTELESVKSENEKLKNELVLEIEKRKKYETNEAKITTVATDLSQYYR 573
Query: 286 YELALLEDITTRRKKIQLTEKKKDLEY-AIAQRLNQLFKRFIYKFQNEIEIYF 441
+ + + + + K+ + + + L + + F F +E YF
Sbjct: 574 ESKEYIASLYEKLDRTERNNKENENNFWNLKFNLLTMLRSFHGSFTDETNGYF 626
>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
3|||Manual
Length = 872
Score = 27.5 bits (58), Expect = 2.0
Identities = 38/173 (21%), Positives = 67/173 (38%), Gaps = 7/173 (4%)
Frame = +1
Query: 175 NLYTDEEIKEISQKRKEFEYHIQRRVKQKEDYVQYIAYELALLEDITTRRKKIQLTEKKK 354
+L+ ++EI E + +K E ++ L E + K L K
Sbjct: 299 SLFISNNLEEIHINWNILESVVNDTIKLLESESKFSEATLPEPELVQVPYAKDILGNSLK 358
Query: 355 DLEYAIAQRLNQ----LFKRFIYKFQNEIEIYFEYIKFCKGVG--FQQAISGIIGQMLQI 516
D +I + + + LF FI F + +F V FQ I I Q ++
Sbjct: 359 DYVISICEHIGEEETELFLVFISGFYGLCKKFFSIPNGPALVDTIFQPQIDIFISQ--EL 416
Query: 517 HGDKPQMWLMASKWESLEQNNLENAKAFLLKGIQRNPDAEPLYLELF-NIELI 672
H K W + +W+ + + + F K + +N A+ +LE F N+ L+
Sbjct: 417 HYFKTVGWSLVDQWDQKLEEKEDATECFFYKNVSQN-TAKNNFLETFKNVMLL 468
>SPBC13G1.03c |pex14||peroxisomal membrane anchor
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Frame = +1
Query: 106 KMAEQVNQRIENMINELEQMRRTNLYTDEEIKEISQ-----KRKEFEYHIQRRVKQKEDY 270
K ++++ ++++ L ++RT+ D EI ISQ +++ K +E+
Sbjct: 140 KQQDELDIALDDLEETLNTLKRTSENRDREIARISQDVYTMSTITLPQSLEQIKKSQEEA 199
Query: 271 VQYIAYELALLEDITTRRKK 330
+Q ++ E++ L + T KK
Sbjct: 200 LQNLSREISSLRCLQTDSKK 219
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = -1
Query: 447 ILKIYFNFILELINKALEKLVQTLSNGILQILF 349
ILK FN + + + +EKL++++S +L++ F
Sbjct: 630 ILKRIFNSLTSINDSNIEKLLESISYSLLKLFF 662
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Frame = -3
Query: 262 LFV*LSFVCDIQTLFVFGIFLLSLHLYISLF------FSFAPTHLSYSQYVDLLVQPFLF 101
LF L FVC ++ +LH ++ LF F L Y + ++ F +
Sbjct: 17 LFFRLFFVCSFFFPLLYSFIFATLHAFVFLFSHTLVSSQFRRLKLPYHHHHTFTIEAFFY 76
Query: 100 ISLYYFYY 77
++F++
Sbjct: 77 WFFFFFFF 84
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/75 (24%), Positives = 35/75 (46%)
Frame = +1
Query: 145 INELEQMRRTNLYTDEEIKEISQKRKEFEYHIQRRVKQKEDYVQYIAYELALLEDITTRR 324
IN L+++RR NLY EI +S K+K ++ + ++ + E ++ E+
Sbjct: 583 INRLQRLRRMNLY---EITFLSMKQKMQLKSLREEIDNTKEALDLSVKERSIQEEKLNES 639
Query: 325 KKIQLTEKKKDLEYA 369
K T ++ + A
Sbjct: 640 LKTSKTNLEEQTQLA 654
Score = 25.4 bits (53), Expect = 7.9
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Frame = +1
Query: 115 EQVNQRIENMINELEQMRRTNLYTDEEIKEISQKRKEFEYHI---QRRVKQKEDYVQYIA 285
E +N+RI +EL M N E+K QK + I + K+ + + +
Sbjct: 830 ETLNERISAAADELSSMESINKNQANELKLAKQKCSNLQEKINFGNKLAKEHTEKISSLE 889
Query: 286 YEL-ALLEDITTRRKKIQLTEKKKD 357
+L A + +T K+++ + + D
Sbjct: 890 KDLEAATKTASTLSKELKTVKSEND 914
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.2 bits (55), Expect = 4.5
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +1
Query: 118 QVNQRIENMINELEQMRRTNLYTDEEIKEISQKRKEFEYHIQRRVKQ--KEDYVQYIAYE 291
Q NQR N+I+ L N+Y E E + F Y + R + + + D + I Y+
Sbjct: 359 QPNQRPANLIDALNATSSDNVYFLREEGENALDASAFHYSVYRIILRFLRMDGLMEIPYD 418
Query: 292 L 294
L
Sbjct: 419 L 419
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 26.2 bits (55), Expect = 4.5
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +1
Query: 187 DEEIKEISQKRKEFEYHIQRRVKQKEDYVQYIAYELALLEDITT--RRKKIQLTEKKKDL 360
D +IK +S K+K+FE + DY ++ L+ E T+ + K+ + KK+D
Sbjct: 351 DTDIKNVSTKKKDFE-------ETSRDYYTSLSRYLSKSEKETSSDKTKESKFAAKKRDF 403
Query: 361 E 363
E
Sbjct: 404 E 404
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 26.2 bits (55), Expect = 4.5
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Frame = -3
Query: 217 VFGIFLLSLHLYISLFFSFAPTHLSYSQYVDLLVQPF-------LFISLYYFYYTKTLSY 59
+F IF+ S+ + I + F H YS V +++Q F +F+S + YY + +Y
Sbjct: 353 LFSIFMASMSVIIVVSEVFL--HTQYS-LVGIILQKFTNSSATSIFVSFLFVYYMRYCTY 409
Query: 58 KTV 50
K++
Sbjct: 410 KSL 412
>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 497
Score = 26.2 bits (55), Expect = 4.5
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -3
Query: 589 HFLDCSVLNSPI 554
HF+DC+VLN P+
Sbjct: 485 HFMDCNVLNRPV 496
>SPAC20G8.10c ||SPAC3A12.01c|beclin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 464
Score = 26.2 bits (55), Expect = 4.5
Identities = 19/89 (21%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Frame = +1
Query: 103 IKMAEQVNQRIENMINELEQMRRTNLYTDEEIKEISQKRKEFEYHI-QRRVKQKEDYVQY 279
+K + ++IE + +E +++++ DEE +++ + +EF ++ Q ++K+ QY
Sbjct: 196 MKQINEKEEKIEEISDETDKLQKLLRELDEEKEKVYAEEQEFYNNLNQFQIKKLSLERQY 255
Query: 280 IAYELALLEDITTRRKKIQLTEKKKDLEY 366
L E + + +K+Q D+ Y
Sbjct: 256 DCANLE-FEHNSRKLEKLQKMNVFSDIFY 283
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/72 (22%), Positives = 31/72 (43%)
Frame = +1
Query: 115 EQVNQRIENMINELEQMRRTNLYTDEEIKEISQKRKEFEYHIQRRVKQKEDYVQYIAYEL 294
E N+R + + E + +RR N E+ K S++ + I+ + + +
Sbjct: 108 ENQNKRFDALTTENQSLRRANSELQEQSKIASEQLSIAKDQIEALQNENSHLGEQVQSAH 167
Query: 295 ALLEDITTRRKK 330
L DI R+K+
Sbjct: 168 QALSDIEERKKQ 179
>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 172
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -3
Query: 208 IFLLSLHLYISLFF-SFAPTHLSYSQYVDLLVQPFLFISLYYFYYTKTLS 62
+FLL Y LFF P+H+ Y+ + +L ++ + +T TLS
Sbjct: 118 VFLLFFKFYSRLFFFRIIPSHILYNSFRIVLFLSHASPAILHTIFTFTLS 167
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 26.2 bits (55), Expect = 4.5
Identities = 18/87 (20%), Positives = 40/87 (45%)
Frame = +1
Query: 106 KMAEQVNQRIENMINELEQMRRTNLYTDEEIKEISQKRKEFEYHIQRRVKQKEDYVQYIA 285
K+A Q + +EN +++ TDE + + +K + EY +Q +++ Y Q
Sbjct: 620 KLAAQRDAAVENANYSRSLIQKKT--TDETVGSLIEKVGKLEYEVQGTLEEATSYYQKNT 677
Query: 286 YELALLEDITTRRKKIQLTEKKKDLEY 366
LL+ + + ++ +K ++Y
Sbjct: 678 ELQQLLKQNESASELLKSRNEKLCVDY 704
>SPAC1952.17c ||SPAC890.01c|GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 619
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 304 EDITTRRKKIQLTEKKK 354
ED+TT R+KI +T K+K
Sbjct: 595 EDLTTSRRKIGITSKRK 611
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 217 RKEFEYHIQRRVKQKEDYVQYIAYELALLEDITTRRKKIQ 336
RKE E ++RR K+K++ + Y++A E RRK I+
Sbjct: 292 RKEME-QMKRRTKEKKEMKRRALYDIASDEKDFRRRKIIR 330
>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 404
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 671 ISSMLNNSRYNGSASGFL*IPFKRKAFAFSRL 576
I S+++ + NG+ GFL P+ K F F L
Sbjct: 367 IQSLISWNEANGTREGFLRDPYSGKEFPFQLL 398
>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 451
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 256 QKEDYVQYIAYELALLEDITTRRKKIQLTEKKKDLEY-AIAQRLNQLFKR 402
+K+D VQ + ++ R++ I + + +KD +Y +I Q+L QL+ +
Sbjct: 401 KKDDGVQSASLNASMSARSHARQRSIHVPKTRKDTDYESIHQKLLQLWSQ 450
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.8 bits (54), Expect = 6.0
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +1
Query: 130 RIENMINELEQMRRTNLYTDEEIKEISQKRKEFEYHIQRRVKQKEDYVQYIAYELALLED 309
R+E + NELE ++ + +++ +E + + +IQ ++ +L LE
Sbjct: 671 RLEQLTNELESLKSISRNKEKKFEEAISSLQLEKSNIQLQLTSLTSERSLALEKLNDLEK 730
Query: 310 --ITTRRKKIQLTEKKKDLEYAIAQR 381
+ + R K +L E K L+ +A +
Sbjct: 731 SLVLSERSKDELDESYKSLQEQLASK 756
>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 707
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 171 SSHLLQLIYHILNTLIYLFSHFYLYL 94
SS L + +HI+ +LIYL H +++
Sbjct: 480 SSQLFPMRFHIIRSLIYLSRHTGVFI 505
>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 298
Score = 25.4 bits (53), Expect = 7.9
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +1
Query: 190 EEIKEISQKRKEFEYHIQRRVKQKEDYVQYIAYELALLEDITTRRKKIQLTEKKKD 357
EEIK+IS K++ V + E+ + + + +D T+ KK + TEKK+D
Sbjct: 8 EEIKDISSKQEN-----SSEVPKAEEAGKVVESQ----KDTTSEEKKEETTEKKED 54
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +1
Query: 139 NMINELEQMRRTNLYTDEEIKEISQKRKEFEYHIQRRVKQKE 264
N N + R + DEE K K+ F+ H Q ++ Q++
Sbjct: 815 NAYNRISTFLRMQI--DEECKPCQFKKSNFKEHFQNKIYQEQ 854
>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 674
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 169 RTNLYTDEEIKEIS-QKRKEFEYHIQRRVKQKEDYVQYIAYEL 294
+ N+ EE++E +KRKEFE I+R +++Y +EL
Sbjct: 39 KINITDLEELQEFQGRKRKEFEDAIRRNRLAMGHWMRYGQWEL 81
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,965,724
Number of Sequences: 5004
Number of extensions: 64181
Number of successful extensions: 262
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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