Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29m09
         (702 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    27   0.76 
U89804-1|AAD03795.1|   89|Anopheles gambiae Tc1-like transposase...    24   5.3  
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    24   5.3  
AJ438610-11|CAD27483.1|  765|Anopheles gambiae hypothetical prot...    24   5.3  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 26.6 bits (56), Expect = 0.76
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
 Frame = +1

Query: 103 IKMAEQVNQRIENMINELEQMRRTNLYTDEEIKEISQKRKEFEYHIQRRVKQ---KEDYV 273
           I +AE+  + +E +    E MRR       E+    QKRKE  Y  Q R  Q   KE+  
Sbjct: 335 ITIAEK-EKELEQVRPRYEAMRRKEEECSRELNLKEQKRKEL-YAKQGRGSQFSSKEERD 392

Query: 274 QYIAYELALL----EDITTRRKKIQLTEKKKDL 360
           ++I  EL  L    +D  + + K+Q  + KKD+
Sbjct: 393 KWIQGELKSLNKQIKDKISHQNKLQ-DDLKKDI 424


>U89804-1|AAD03795.1|   89|Anopheles gambiae Tc1-like transposase
           protein.
          Length = 89

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 538 WLMASKWESLEQNNLENAKAFLLK 609
           W M+ KW+ +  N+L+  K+ + K
Sbjct: 43  WEMSLKWQLMHDNDLKRVKSGVKK 66


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
           protein.
          Length = 1645

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 452 NSVRVWGFNRLSQVSSD 502
           NS++ WG NRL  ++ D
Sbjct: 368 NSLKQWGMNRLRMMNRD 384


>AJ438610-11|CAD27483.1|  765|Anopheles gambiae hypothetical protein
           protein.
          Length = 765

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 452 NSVRVWGFNRLSQVSSD 502
           NS++ WG NRL  ++ D
Sbjct: 369 NSLKQWGMNRLRMMNRD 385


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 719,327
Number of Sequences: 2352
Number of extensions: 16326
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71504505
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)