Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29m07
         (388 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0629 - 9961315-9961521,9962765-9963232                           28   3.0  
12_01_0999 - 10128057-10128143,10128346-10128516,10128602-101286...    27   6.9  

>03_02_0629 - 9961315-9961521,9962765-9963232
          Length = 224

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +3

Query: 93  NIEYRRGGFALIFLAEYSSILFIRMILVIINMGGYNLRFFFYLKLRLISF 242
           ++ YRRG    +FLA      ++ ++ V I++GG+   F F  +L+ I F
Sbjct: 22  HVRYRRGDTLGLFLA------WVSLVPVFISLGGFVSHFLFRRELQGICF 65


>12_01_0999 -
           10128057-10128143,10128346-10128516,10128602-10128677,
           10128787-10128917,10129007-10129111,10129215-10129391,
           10129475-10129623,10129715-10129826,10131819-10132070,
           10132323-10132444,10132537-10133371,10133386-10133489,
           10133582-10133647,10133766-10133888,10133975-10134151,
           10134217-10134387,10134478-10134957,10135357-10135369
          Length = 1116

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -1

Query: 145 EYSA-KKIKANPPLLYSILNPETNSLSPSAKSKGVRFVSANKEEKKHKN 2
           EY A KK  AN P   ++  P T SLS   +    +   A  + ++ +N
Sbjct: 53  EYRARKKAAANTPCSATLRQPTTASLSKEFEIVNAQLAEATNDAREERN 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,496,533
Number of Sequences: 37544
Number of extensions: 74840
Number of successful extensions: 163
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)