Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29m07
         (388 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022980-11|AAG24189.1|  330|Caenorhabditis elegans Serpentine r...    27   3.5  
Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical pr...    27   6.1  
AF016657-14|AAB93663.3|  495|Caenorhabditis elegans Hypothetical...    26   8.1  

>AF022980-11|AAG24189.1|  330|Caenorhabditis elegans Serpentine
           receptor, class j protein49 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 117 FALIFLAEYSSILFIRMILVIINMGGYNLRFFFYLK 224
           F L+F A ++ I  +   L+ I++  Y   FF +LK
Sbjct: 42  FLLLFFAVFNMIYSVMNFLIQIDIHSYRYCFFLFLK 77


>Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical
           protein C27C12.4 protein.
          Length = 450

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +3

Query: 141 YSSILFIRMILVIINMGGYNLRFFFYLKLRL 233
           YSS LF+   L+I+ +G     FFF LK+RL
Sbjct: 406 YSSFLFLPSQLLILTIGCVASTFFF-LKVRL 435


>AF016657-14|AAB93663.3|  495|Caenorhabditis elegans Hypothetical
           protein C16C4.13 protein.
          Length = 495

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 126 IFLAEYSSILFIRMILVIINMGGYNLRFFFYLKLRLISF 242
           IF  +   +L +  + V+ +  G N+R+FF    +LI F
Sbjct: 280 IFFFDIFYVLILFKLFVLKHCRGRNMRYFFKFSQKLIFF 318


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,378,711
Number of Sequences: 27780
Number of extensions: 81139
Number of successful extensions: 248
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)