Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29m04
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha...    30   0.36 
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo...    29   0.48 
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    28   1.1  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   1.9  
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    27   3.4  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    27   3.4  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   5.9  
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    25   7.8  

>SPBC14F5.12c |cbh2||centromere binding protein
           Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 28/121 (23%), Positives = 49/121 (40%)
 Frame = +1

Query: 316 ESTVRSIKKSEDKIRSSIASYSLSAKIVRDPAIEKMEVALSFWIEDCNQKRVPLSGAMVR 495
           +STV SI  S+++   ++ + +   +  R      +E AL  W     ++   ++G  ++
Sbjct: 47  QSTVSSILSSKNEFLDNLDAENSQIRRNRQGKYPILENALIDWQTRLQKQDGAITGNAIK 106

Query: 496 EKAKRLYAHFKEPXXXXXXXXXXXXXFQASEGWFNKFKVRQSLHSINSDEEPSTSTGNVT 675
           + A  L+    E               + S GW  KFK R   H +    E STS    T
Sbjct: 107 KSAAELWRRIPEYSELPIP--------EFSNGWLEKFKKRCLKHGLKLQGE-STSVNQGT 157

Query: 676 F 678
           +
Sbjct: 158 Y 158


>SPAC9E9.10c |cbh1|cbh|centromere binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 514

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 19/75 (25%), Positives = 35/75 (46%)
 Frame = +1

Query: 391 KIVRDPAIEKMEVALSFWIEDCNQKRVPLSGAMVREKAKRLYAHFKEPXXXXXXXXXXXX 570
           K +R P    ++ A+  W++    + +P+SG M+++ A R ++  K P            
Sbjct: 71  KKIRAPKFPLLDNAVYEWLQQREVEGLPISGDMIKQAATRFWS--KIPAYASLPLP---- 124

Query: 571 XFQASEGWFNKFKVR 615
               S GW +KF+ R
Sbjct: 125 --DFSNGWLDKFRRR 137


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 20/46 (43%), Positives = 24/46 (52%)
 Frame = -3

Query: 350 SSDFFIDRTVDSLTLNERDMDANDSPRCKRSSISIFTLSGNTDLFR 213
           SS+  I +TV    LNE   D N  P   RS++S   LSG  D FR
Sbjct: 415 SSEIGIFQTVKLWYLNESKFDTNPPP---RSTMSCRKLSGIDDPFR 457


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 574 FQASEGWFNKFKVRQSLHSINSDEEPSTSTGNV 672
           F  + GW +      S H  N+ E PS+ +GNV
Sbjct: 249 FSVASGWVSVLMNSSSAHQSNNLEFPSSISGNV 281


>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 583 SEGWFNKFKVRQSLHSINSDEEPSTS 660
           S GW   F+ R  LH+IN  E+P+ S
Sbjct: 127 SNGWLEGFRKRHILHAIN--EQPTES 150


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/38 (31%), Positives = 27/38 (71%)
 Frame = +1

Query: 277 ESFASISRSFNVNESTVRSIKKSEDKIRSSIASYSLSA 390
           E+F ++++ +  +   +RS++KS D +R S+++ SLS+
Sbjct: 453 EAFENLAQQYFTDGVEMRSVRKSSD-LRRSLSAASLSS 489


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 389 ADSEYEAIEDLILSSDFFIDRTVDSLTLNERDMD 288
           A  E   +ED I + D  ++   DS   NE D+D
Sbjct: 863 AQREVPDVEDAIEAEDEMLEEASDSEAANEEDID 896


>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 259 DRLHLGESFASI-SRSFNVNESTVRSIKKSEDKIRSSIASYS 381
           +R  L  S  SI SR     E  +R+I+ S DK+ + +A YS
Sbjct: 460 NRAQLSSSLDSIISRPPKFVEYDLRAIRGSTDKVAAFVAPYS 501


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,402,106
Number of Sequences: 5004
Number of extensions: 44668
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)