Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29m04
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440...    29   4.6  
04_04_1466 - 33799104-33799229,33799659-33799669,33800052-338002...    29   4.6  

>08_01_0004 +
           39265-39440,39545-39652,41955-43528,43650-43996,
           44090-44322,45308-45412,45531-45705,46443-46658
          Length = 977

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = -3

Query: 374 EAIEDLILSSDFFIDRTVDSLTLNERDMDANDS-PRCKRSSISIFTLSGNTDLFRAETLF 198
           + + D++    F    +V   +    D + +D  P C  +S+   +    T+L+R  T  
Sbjct: 249 KCVGDILFEDTFSPSSSVKEASEEAHDSENDDDYPACSVASVLSVSYCDETELYRPTTAC 308

Query: 197 SFFFSRHYKS 168
              F +H KS
Sbjct: 309 LELFGQHNKS 318


>04_04_1466 -
           33799104-33799229,33799659-33799669,33800052-33800200,
           33800261-33800299,33800690-33800746,33800839-33801628,
           33801705-33801980,33802051-33802117,33802211-33802285,
           33802618-33802812,33802927-33803076,33803152-33803522,
           33804070-33804193,33804246-33804275,33804306-33804417,
           33804919-33804985,33805138-33805180,33805768-33805872
          Length = 928

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/67 (26%), Positives = 27/67 (40%)
 Frame = -3

Query: 461 WLQSSIQNDNATSIFSIAGSRTIFADSEYEAIEDLILSSDFFIDRTVDSLTLNERDMDAN 282
           WL+  +    +TS+ +     T F     E  E  + SSD    R+VDS    + D +  
Sbjct: 340 WLREELLKKKSTSVSASVQHSTEFHSKGSEDAEKTLKSSDQADSRSVDSAKSTDDDEEDE 399

Query: 281 DSPRCKR 261
           D     R
Sbjct: 400 DEIEAAR 406


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,617,759
Number of Sequences: 37544
Number of extensions: 254776
Number of successful extensions: 674
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)