Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29m04
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/...    28   5.5  
Z82278-4|CAB05257.2|  487|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U00064-2|AAD31934.2|  329|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AC024796-6|AAK29891.1|  223|Caenorhabditis elegans Hypothetical ...    28   7.2  

>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
            (trithorax/polycomb) domaincontaining protein 2, isoform
            a protein.
          Length = 1507

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +1

Query: 187  KKKEKRVSARNKSVLPLKVKIEMLDRLHLGESFASISRSFNVNESTV-RSIKKSEDKIRS 363
            +KKE+   AR ++  P    I  +  L+  +SFAS SR F   +  + +S  K ++    
Sbjct: 807  RKKEREEKARQEAEKPSNHLIADMMTLYNNQSFASSSRGFYRKQKPIPKSHPKHQEHHHH 866

Query: 364  SIASYS 381
            + AS S
Sbjct: 867  AKASVS 872


>Z82278-4|CAB05257.2|  487|Caenorhabditis elegans Hypothetical
           protein M162.5 protein.
          Length = 487

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 84  GYPPDSWYIRAILSV*SMSCLHFTLSNL 167
           G  P S  IR I+ + SM+CL F +SN+
Sbjct: 28  GLEPSSSKIRYIVLILSMTCLSFMMSNV 55


>U00064-2|AAD31934.2|  329|Caenorhabditis elegans Hypothetical
           protein ZC155.7 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/60 (23%), Positives = 30/60 (50%)
 Frame = +1

Query: 184 LKKKEKRVSARNKSVLPLKVKIEMLDRLHLGESFASISRSFNVNESTVRSIKKSEDKIRS 363
           ++++EK V A N S+  L    + L  + + +        +NV ++++R  K  ED  ++
Sbjct: 238 VREREKEVMAVNTSIRELNTLFQDLSEMIVDQGSVIDRIDYNVEQTSIRVSKAVEDVFKA 297


>AC024796-6|AAK29891.1|  223|Caenorhabditis elegans Hypothetical
           protein Y48G1C.6 protein.
          Length = 223

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 574 FQASEGWFNKFKVRQSLHSINSDEEP 651
           F+AS GW +KF  R +L +  +  EP
Sbjct: 122 FKASRGWLDKFMCRHNLSTRRARTEP 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,213,200
Number of Sequences: 27780
Number of extensions: 248168
Number of successful extensions: 596
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)