Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29m04
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    25   0.51 
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              23   3.6  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   4.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.4  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 361 SSIASYSLSAKIVRDPAIEKMEVALSFWIE 450
           SSIA +S+S ++++D  +EK     +F  E
Sbjct: 261 SSIAEFSVSTEVLQDHTLEKSNDYYAFHFE 290


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 461 WLQSSIQNDNATSIFSIAGSRTIFADSEYEAIEDL 357
           W Q+ + N +  S ++IAG      + +Y   EDL
Sbjct: 76  WQQTGVMNGSELSTYNIAG----IIEGQYHDDEDL 106


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 328 RSIKKSEDKIRSSIASYSLSAKI 396
           RS K  +DKIR S   +   AKI
Sbjct: 234 RSKKSEDDKIRRSSIGFLTRAKI 256


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 471 HPFLVAVFNPK*QRHFH 421
           +P +  VFNP+ ++ FH
Sbjct: 673 NPVIYTVFNPEFRKAFH 689


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,084
Number of Sequences: 438
Number of extensions: 3103
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)