Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29m02
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    30   0.29 
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa...    29   0.51 
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    26   4.7  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    26   4.7  

>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
 Frame = +1

Query: 289 SEILNNELKDDPYVIVFLEETLSVEDFSRKNNEGDISIPYLYDNLSDALYLPSVEDAS-- 462
           SEIL  E+KD    IV  +E + V +   K N   ++ P  YD +      P VE+A   
Sbjct: 2   SEILIEEIKDQ---IVVKDEEIDVSELEVKLN---VTKPVGYDTVVVIEGAPVVEEAKQQ 55

Query: 463 ---RVLEEVAKGAVHVKLTQNGLSAAIEDKNNRFMFIAL 570
              R L       +  K+ +NG     E+KN + M + L
Sbjct: 56  DFFRFLSSKVLAKIG-KVKENGFYMPFEEKNGKKMSLGL 93


>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 440

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
 Frame = +1

Query: 319 DPYVIVFLEETLSVEDFSRKNNEGDISIPYLYDNLSDALYLPSVEDASRVLEEVAKGAVH 498
           + Y IVF+E+  S ED+   +    +S     + ++D L + +V+  S+ +E     A+ 
Sbjct: 288 EKYPIVFIEDPFSEEDWGAFSY---MSSKTKVEVIADDLTVTNVKRLSKAIELKCANALL 344

Query: 499 VKLTQNG-LSAAIEDKN 546
           VK+ Q G LS  I+  N
Sbjct: 345 VKINQIGSLSETIDAAN 361


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/62 (22%), Positives = 27/62 (43%)
 Frame = +1

Query: 379 NNEGDISIPYLYDNLSDALYLPSVEDASRVLEEVAKGAVHVKLTQNGLSAAIEDKNNRFM 558
           N+  D S  +   N    + LPS  DAS ++    +   H+ L  +G+   + ++     
Sbjct: 310 NDSSDPSDNFTPSNTESTIDLPSATDASHLMSRPDREVNHLILCCHGIGQKMGERVETVS 369

Query: 559 FI 564
           F+
Sbjct: 370 FV 371


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +1

Query: 496 HVKLTQNGLSAAIEDKN--NRFMFIALKDAMEGESRYDLLRRHSNFMEDQISKLEKK 660
           H+KL+  GLS AI   N  NR    AL  A+  +  Y   ++  N  +  + K E K
Sbjct: 298 HIKLSDFGLSTAIVTSNQVNRLQH-ALVSAVNPQRPYLTQKQRRNIYKALLEKNENK 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,022,114
Number of Sequences: 5004
Number of extensions: 61573
Number of successful extensions: 161
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)