Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29m02
(723 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006801-2|AAF60751.1| 914|Caenorhabditis elegans Hypothetical ... 33 0.27
AF022981-2|AAG24200.1| 236|Caenorhabditis elegans Hypothetical ... 29 2.5
Z47809-8|CAH10845.1| 968|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z47809-5|CAD57699.1| 1019|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z47809-4|CAA87782.1| 1016|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z36719-11|CAH04695.1| 968|Caenorhabditis elegans Hypothetical p... 29 4.4
Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical p... 29 4.4
Z36719-9|CAD57685.1| 1019|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z36719-8|CAA85318.1| 1016|Caenorhabditis elegans Hypothetical pr... 29 4.4
U86640-1|AAB47273.1| 1016|Caenorhabditis elegans MEL-11 protein. 29 4.4
AC024850-1|AAF60860.2| 404|Caenorhabditis elegans Groundhog (he... 29 4.4
>AC006801-2|AAF60751.1| 914|Caenorhabditis elegans Hypothetical
protein Y52D5A.1 protein.
Length = 914
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/52 (26%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +1
Query: 298 LNNELKDDPYVIVFLEETLSVEDFSRKNNEGDISIPYLYDNLSDALY-LPSV 450
+NN + D P + +FL+ + S+ D N+ D+ + Y++ +S++++ LP +
Sbjct: 458 MNNSIFDLPVIYIFLKMSNSIFDLPMSNSIFDLPVIYIFLKMSNSIFDLPVI 509
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/52 (23%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +1
Query: 298 LNNELKDDPYVIVFLEETLSVEDFSRKNNEGDISIPYLYDNLSDALY-LPSV 450
++N + D P + +FL+ + S+ N+ D+ + Y++ +S++++ LP +
Sbjct: 353 MSNSIFDLPVIYIFLKMSNSIFKLPMNNSIFDLPVIYIFLKMSNSIFDLPVI 404
>AF022981-2|AAG24200.1| 236|Caenorhabditis elegans Hypothetical
protein W03F9.2a protein.
Length = 236
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -3
Query: 430 RHLNYHTGTESKYHLRYFY 374
R+LN+HT E K+HL +F+
Sbjct: 100 RNLNFHTEDEGKHHLEHFH 118
>Z47809-8|CAH10845.1| 968|Caenorhabditis elegans Hypothetical
protein C06C3.1d protein.
Length = 968
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -2
Query: 254 DFREFPELLDKSPHKNTGTVDALATLRTSNGNSKRQNAIFV 132
D E ELL+K + NT TVD L L S +SK + F+
Sbjct: 67 DEEEVEELLNKGANINTCTVDGLTALHQSVIDSKPEMVRFL 107
>Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical
protein C06C3.1c protein.
Length = 1124
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -2
Query: 254 DFREFPELLDKSPHKNTGTVDALATLRTSNGNSKRQNAIFV 132
D E ELL+K + NT TVD L L S +SK + F+
Sbjct: 67 DEEEVEELLNKGANINTCTVDGLTALHQSVIDSKPEMVRFL 107
>Z47809-5|CAD57699.1| 1019|Caenorhabditis elegans Hypothetical
protein C06C3.1b protein.
Length = 1019
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -2
Query: 254 DFREFPELLDKSPHKNTGTVDALATLRTSNGNSKRQNAIFV 132
D E ELL+K + NT TVD L L S +SK + F+
Sbjct: 67 DEEEVEELLNKGANINTCTVDGLTALHQSVIDSKPEMVRFL 107
>Z47809-4|CAA87782.1| 1016|Caenorhabditis elegans Hypothetical
protein C06C3.1a protein.
Length = 1016
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -2
Query: 254 DFREFPELLDKSPHKNTGTVDALATLRTSNGNSKRQNAIFV 132
D E ELL+K + NT TVD L L S +SK + F+
Sbjct: 67 DEEEVEELLNKGANINTCTVDGLTALHQSVIDSKPEMVRFL 107
>Z36719-11|CAH04695.1| 968|Caenorhabditis elegans Hypothetical
protein C06C3.1d protein.
Length = 968
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -2
Query: 254 DFREFPELLDKSPHKNTGTVDALATLRTSNGNSKRQNAIFV 132
D E ELL+K + NT TVD L L S +SK + F+
Sbjct: 67 DEEEVEELLNKGANINTCTVDGLTALHQSVIDSKPEMVRFL 107
>Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical
protein C06C3.1c protein.
Length = 1124
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -2
Query: 254 DFREFPELLDKSPHKNTGTVDALATLRTSNGNSKRQNAIFV 132
D E ELL+K + NT TVD L L S +SK + F+
Sbjct: 67 DEEEVEELLNKGANINTCTVDGLTALHQSVIDSKPEMVRFL 107
>Z36719-9|CAD57685.1| 1019|Caenorhabditis elegans Hypothetical
protein C06C3.1b protein.
Length = 1019
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -2
Query: 254 DFREFPELLDKSPHKNTGTVDALATLRTSNGNSKRQNAIFV 132
D E ELL+K + NT TVD L L S +SK + F+
Sbjct: 67 DEEEVEELLNKGANINTCTVDGLTALHQSVIDSKPEMVRFL 107
>Z36719-8|CAA85318.1| 1016|Caenorhabditis elegans Hypothetical
protein C06C3.1a protein.
Length = 1016
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -2
Query: 254 DFREFPELLDKSPHKNTGTVDALATLRTSNGNSKRQNAIFV 132
D E ELL+K + NT TVD L L S +SK + F+
Sbjct: 67 DEEEVEELLNKGANINTCTVDGLTALHQSVIDSKPEMVRFL 107
>U86640-1|AAB47273.1| 1016|Caenorhabditis elegans MEL-11 protein.
Length = 1016
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -2
Query: 254 DFREFPELLDKSPHKNTGTVDALATLRTSNGNSKRQNAIFV 132
D E ELL+K + NT TVD L L S +SK + F+
Sbjct: 67 DEEEVEELLNKGANINTCTVDGLTALHQSVIDSKPEMVRFL 107
>AC024850-1|AAF60860.2| 404|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 16 protein.
Length = 404
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 547 NRFMFIALKDAMEGE--SRYDLLRRHSNFMEDQISKL 651
NRF + +A+E Y+ LRR SN +ED +SK+
Sbjct: 273 NRFGYRCCDEALEALILKSYEKLRRKSNDLEDNLSKI 309
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,471,281
Number of Sequences: 27780
Number of extensions: 339660
Number of successful extensions: 842
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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