Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29m01
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    29   0.69 
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    27   3.7  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    26   4.8  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   8.5  

>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 20/60 (33%), Positives = 25/60 (41%)
 Frame = +2

Query: 410 RPLHKYHSVRPLHKYHSVRPLHKYHSVRPLHKYHSVRPLHKYHSVRPLHKYHSVRPLHKY 589
           R LH      PLHK H     HK+    P +  H+   L  Y    P H +    PL+KY
Sbjct: 171 RALHHRWLYAPLHKLH-----HKWIVPTP-YSSHAFHYLDGYSQSLPYHMFPFFFPLNKY 224



 Score = 29.1 bits (62), Expect = 0.69
 Identities = 20/60 (33%), Positives = 25/60 (41%)
 Frame = +2

Query: 437 RPLHKYHSVRPLHKYHSVRPLHKYHSVRPLHKYHSVRPLHKYHSVRPLHKYHSVRPLHKY 616
           R LH      PLHK H     HK+    P +  H+   L  Y    P H +    PL+KY
Sbjct: 171 RALHHRWLYAPLHKLH-----HKWIVPTP-YSSHAFHYLDGYSQSLPYHMFPFFFPLNKY 224



 Score = 29.1 bits (62), Expect = 0.69
 Identities = 20/60 (33%), Positives = 25/60 (41%)
 Frame = +2

Query: 464 RPLHKYHSVRPLHKYHSVRPLHKYHSVRPLHKYHSVRPLHKYHSVRPLHKYHSVRPLHKY 643
           R LH      PLHK H     HK+    P +  H+   L  Y    P H +    PL+KY
Sbjct: 171 RALHHRWLYAPLHKLH-----HKWIVPTP-YSSHAFHYLDGYSQSLPYHMFPFFFPLNKY 224



 Score = 29.1 bits (62), Expect = 0.69
 Identities = 20/60 (33%), Positives = 25/60 (41%)
 Frame = +2

Query: 491 RPLHKYHSVRPLHKYHSVRPLHKYHSVRPLHKYHSVRPLHKYHSVRPLHKYHSVRPLHKY 670
           R LH      PLHK H     HK+    P +  H+   L  Y    P H +    PL+KY
Sbjct: 171 RALHHRWLYAPLHKLH-----HKWIVPTP-YSSHAFHYLDGYSQSLPYHMFPFFFPLNKY 224



 Score = 26.6 bits (56), Expect = 3.7
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
 Frame = +2

Query: 389 LHKYHSVRPLHKYHS---VRPLHKYHSVRPLHKYHSVRPLHKYHSVRPLHKY 535
           LH      PLHK H    V   +  H+   L  Y    P H +    PL+KY
Sbjct: 173 LHHRWLYAPLHKLHHKWIVPTPYSSHAFHYLDGYSQSLPYHMFPFFFPLNKY 224


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 641 YHSVRPLHKYHSVRHNITLDNILIRTP 721
           Y+  +P   ++S+RHN++L+   IR P
Sbjct: 327 YYRHQPPAWHNSIRHNLSLNKAFIRIP 353


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +1

Query: 199 SSEVGSHAASAQQQPG-DHLTISAEEDYPPATADEPIHLLHKSAWSSN 339
           S+EV  H ASA   PG D L+     D      DEP+       W+S+
Sbjct: 620 SNEVSLHIASADSAPGFDKLS----SDLSSLLTDEPVVKTEMDDWNSD 663


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 269 KKTTPQQQPMSLYIYFTNQHGRATKSTLKDKFLFLITKI 385
           +K   Q++P S+Y+ F  Q        LKD+F  L  K+
Sbjct: 542 RKVIKQERPDSIYVTFGGQTALNVGIELKDEFEQLGVKV 580


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,992,362
Number of Sequences: 5004
Number of extensions: 70365
Number of successful extensions: 254
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)