Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29m01
(735 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0341 - 7643426-7643973,7644340-7644505 30 1.7
12_01_0077 - 637470-638114 29 3.8
11_01_0076 - 600256-600897 29 3.8
12_01_0981 + 9931542-9931606,9931779-9933105 29 5.1
05_03_0489 - 14662378-14664957 29 5.1
05_03_0484 + 14599786-14602197 29 5.1
10_08_0261 + 16305388-16306104 28 6.7
04_04_0921 - 29431812-29432786 28 6.7
03_01_0230 + 1811071-1811236,1811346-1811458,1811566-1811744,181... 28 6.7
01_06_0303 + 28324155-28325045,28326208-28326321 28 8.8
>03_02_0341 - 7643426-7643973,7644340-7644505
Length = 237
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 386 PLHKYHSVRPLHKYHSVRPLHKY-HSVRPLHKYHSVRPLHKYHSVR-PLHK 532
P HK+H LH V P H + HS+ P+H+ P HK V P HK
Sbjct: 159 PFHKHHHHIVLHPPVIVPPKHDHDHSLPPVHEPPVTVPDHKPAPVTVPDHK 209
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 467 PLHKYHSVRPLHKYHSVRPLHKY-HSVRPLHKYHSVRPLHKYHSVR-PLHK 613
P HK+H LH V P H + HS+ P+H+ P HK V P HK
Sbjct: 159 PFHKHHHHIVLHPPVIVPPKHDHDHSLPPVHEPPVTVPDHKPAPVTVPDHK 209
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 548 PLHKYHSVRPLHKYHSVRPLHKY-HSVRPLHKYHSVRPLHK 667
P HK+H LH V P H + HS+ P+H+ P HK
Sbjct: 159 PFHKHHHHIVLHPPVIVPPKHDHDHSLPPVHEPPVTVPDHK 199
>12_01_0077 - 637470-638114
Length = 214
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 101 SPNMSHHRELKDRDVNDADVTLFKNIPS 184
SP ++ HR L R + A LF+NIPS
Sbjct: 20 SPRITGHRHLNVRSPSAAAAVLFRNIPS 47
>11_01_0076 - 600256-600897
Length = 213
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 101 SPNMSHHRELKDRDVNDADVTLFKNIPS 184
SP ++ HR L R + A LF+NIPS
Sbjct: 20 SPRITGHRHLNVRSPSAAAAVLFRNIPS 47
>12_01_0981 + 9931542-9931606,9931779-9933105
Length = 463
Score = 28.7 bits (61), Expect = 5.1
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
Frame = +2
Query: 386 PLHKYHSVRPLHKY--HSVRPL----HKYHSVRPLHKYHSVRPLHKYHSVRPLHKYHSVR 547
PL+++ +P + Y H+ P+ H Y + P S P H + H +
Sbjct: 87 PLNQFFPYQPQYPYQPHTPFPVPWDYHYYPNPPPHVPPISSTPTHFWEGGHGAHPEPYHQ 146
Query: 548 PLHKYHSVRPLHKYHSVRPLHKYHSVRPLHKYHSVRP 658
P + Y+ P H H H ++ P H ++ RP
Sbjct: 147 PYNPYYHQEPFHPPH-----HHQYNPEPHHPHYEHRP 178
>05_03_0489 - 14662378-14664957
Length = 859
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +3
Query: 375 LLKFHYISTTVYAHYISTTVYAHYISTTVYAHYISTTVYAHYISTTVYAHYISTTV 542
LL+FH+ ++ + YI+ + + V++ I T Y +Y+ TTV
Sbjct: 294 LLRFHFCEIQYPITKVNQRSFFIYINNQTAQNQMDVIVWSGGIGRTTYTNYVVTTV 349
>05_03_0484 + 14599786-14602197
Length = 803
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/72 (23%), Positives = 30/72 (41%)
Frame = +3
Query: 363 FYF*LLKFHYISTTVYAHYISTTVYAHYISTTVYAHYISTTVYAHYISTTVYAHYISTTV 542
FY+ LL+FH+ ++ + YI+ + V++ I T Y Y+ TV
Sbjct: 269 FYY-LLRFHFCEIEYPITKVNQRSFFIYINNQTVQEQMDVIVWSGGIGITTYTDYVIVTV 327
Query: 543 YAHYISTTVYAH 578
+ + V H
Sbjct: 328 GSGQMDLWVALH 339
>10_08_0261 + 16305388-16306104
Length = 238
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 386 PLHKYHSVRPLHKYHSVRPLHKYHSVRPLHKYHSVRPLHKYHSVRPLHKYHSVRP 550
P K +S R K+H RP+ + H +P + H VRP H+ ++ + RP
Sbjct: 186 PPAKGNSHRAFQKHH--RPVLRRHRRQPRQEVHQVRPDGDRHAQDHRERHATGRP 238
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 413 PLHKYHSVRPLHKYHSVRPLHKYHSVRPLHKYHSVRPLHKYHSVRPLHKYHSVRP 577
P K +S R K+H RP+ + H +P + H VRP H+ ++ + RP
Sbjct: 186 PPAKGNSHRAFQKHH--RPVLRRHRRQPRQEVHQVRPDGDRHAQDHRERHATGRP 238
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 440 PLHKYHSVRPLHKYHSVRPLHKYHSVRPLHKYHSVRPLHKYHSVRPLHKYHSVRP 604
P K +S R K+H RP+ + H +P + H VRP H+ ++ + RP
Sbjct: 186 PPAKGNSHRAFQKHH--RPVLRRHRRQPRQEVHQVRPDGDRHAQDHRERHATGRP 238
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 467 PLHKYHSVRPLHKYHSVRPLHKYHSVRPLHKYHSVRPLHKYHSVRPLHKYHSVRP 631
P K +S R K+H RP+ + H +P + H VRP H+ ++ + RP
Sbjct: 186 PPAKGNSHRAFQKHH--RPVLRRHRRQPRQEVHQVRPDGDRHAQDHRERHATGRP 238
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 494 PLHKYHSVRPLHKYHSVRPLHKYHSVRPLHKYHSVRPLHKYHSVRPLHKYHSVRP 658
P K +S R K+H RP+ + H +P + H VRP H+ ++ + RP
Sbjct: 186 PPAKGNSHRAFQKHH--RPVLRRHRRQPRQEVHQVRPDGDRHAQDHRERHATGRP 238
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 548 PLHKYHSVRPLHKYHSVRPLHKYHSVRPLHKYHSVRPLHKYHSVRH 685
P K +S R K+H RP+ + H +P + H VRP H+ H
Sbjct: 186 PPAKGNSHRAFQKHH--RPVLRRHRRQPRQEVHQVRPDGDRHAQDH 229
>04_04_0921 - 29431812-29432786
Length = 324
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/62 (32%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Frame = -1
Query: 663 CSGRTLWYLCSGRTLWYLCSGR-TLWYLCSGRTLWYLCS-GRTLWYLCSGRTLWYLCSGR 490
C G W C + GR W +G LCS GR W C G W GR
Sbjct: 119 CGGGRRWRRCGSWSAVRGSGGRGARWAAWAG-----LCSSGRCAWLRCGGSRWWSAAGGR 173
Query: 489 TL 484
L
Sbjct: 174 WL 175
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/62 (32%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Frame = -1
Query: 636 CSGRTLWYLCSGRTLWYLCSGR-TLWYLCSGRTLWYLCS-GRTLWYLCSGRTLWYLCSGR 463
C G W C + GR W +G LCS GR W C G W GR
Sbjct: 119 CGGGRRWRRCGSWSAVRGSGGRGARWAAWAG-----LCSSGRCAWLRCGGSRWWSAAGGR 173
Query: 462 TL 457
L
Sbjct: 174 WL 175
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/62 (32%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Frame = -1
Query: 609 CSGRTLWYLCSGRTLWYLCSGR-TLWYLCSGRTLWYLCS-GRTLWYLCSGRTLWYLCSGR 436
C G W C + GR W +G LCS GR W C G W GR
Sbjct: 119 CGGGRRWRRCGSWSAVRGSGGRGARWAAWAG-----LCSSGRCAWLRCGGSRWWSAAGGR 173
Query: 435 TL 430
L
Sbjct: 174 WL 175
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/62 (32%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Frame = -1
Query: 582 CSGRTLWYLCSGRTLWYLCSGR-TLWYLCSGRTLWYLCS-GRTLWYLCSGRTLWYLCSGR 409
C G W C + GR W +G LCS GR W C G W GR
Sbjct: 119 CGGGRRWRRCGSWSAVRGSGGRGARWAAWAG-----LCSSGRCAWLRCGGSRWWSAAGGR 173
Query: 408 TL 403
L
Sbjct: 174 WL 175
>03_01_0230 +
1811071-1811236,1811346-1811458,1811566-1811744,
1812024-1812156,1812216-1812494
Length = 289
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 74 AVLVKFCFGSPNMSHHREL 130
AV V+ CFGS ++SHH L
Sbjct: 2 AVSVRCCFGSSSLSHHARL 20
>01_06_0303 + 28324155-28325045,28326208-28326321
Length = 334
Score = 27.9 bits (59), Expect = 8.8
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = -1
Query: 540 LWYLCSGRTLWYLCSGRTLWYLCSGRTLWYLCSGR----TLWYLCSGRTLWYLCSGILVI 373
LW L G+ L+ L +G + LC ++LC+ +W L S + L I V
Sbjct: 235 LWDLAEGKRLYSLDAGSIIHSLCFSPNRYWLCAATQDSIKIWDLESKHIVQDLKPEIPVS 294
Query: 372 KNKNL 358
KN+ L
Sbjct: 295 KNQML 299
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,661,123
Number of Sequences: 37544
Number of extensions: 473639
Number of successful extensions: 1367
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1328
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -