Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29l24
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771           29   4.3  
12_01_0373 + 2897874-2898911                                           29   4.3  
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420...    28   5.6  
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851...    28   7.5  
10_01_0160 - 1812213-1813790                                           27   9.9  
10_01_0154 - 1764554-1764727,1764829-1764927,1765710-1766172,176...    27   9.9  

>12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771
          Length = 372

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = +1

Query: 40  IVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVNDPIESSTGASATEVI 219
           + A  A +  DV+   +G     V+ND+   G   ++    VVV +      G  A E+ 
Sbjct: 273 LTARTAGIDEDVVLLDSGDGKVAVVNDDDDSGPLVVLQRRVVVVEEKGSLILGVEAAEIG 332

Query: 220 NDE 228
           ++E
Sbjct: 333 SEE 335


>12_01_0373 + 2897874-2898911
          Length = 345

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 20/59 (33%), Positives = 26/59 (44%)
 Frame = -1

Query: 221 LITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAA 45
           L+ ++A  P   S  + TTT  AAT     T  S+  TS       +  TS T  A AA
Sbjct: 254 LLLALAAVPSSSSSDTTTTTTAAATTTTSDTSCSTASTST----TSNGATSVTAAATAA 308


>04_01_0312 +
           4206400-4206627,4206661-4207269,4207425-4207902,
           4208006-4208297,4209278-4209569,4210013-4210465
          Length = 783

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 331 YSNLVALRYLKLLVQPQPRLL*WFLL 254
           Y+N  AL+YL      +PRLL W LL
Sbjct: 547 YTNHAALKYLLTKKDAKPRLLRWILL 572


>09_02_0393 +
           8510089-8510274,8510450-8510806,8510889-8511011,
           8511209-8511523,8511576-8511682,8512559-8512629,
           8512952-8513029,8513390-8513454,8514224-8514274,
           8514373-8514414,8514785-8515105,8515154-8517880
          Length = 1480

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +1

Query: 28  GSKTIVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVN 174
           G K+ + +PA+     + S+   S T+ +N+EV+   +T+    AV+V+
Sbjct: 478 GMKSRILSPALPQQSYLSSAELPSLTDHVNEEVAKLDRTVRRITAVLVD 526


>10_01_0160 - 1812213-1813790
          Length = 525

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 398 IAVSASGAVTITASGTASARIFVLKSCGASV 306
           I   ASGA    A+  AS  +FV+KS G +V
Sbjct: 19  IGHGASGATVSLAADDASGELFVVKSAGDAV 49


>10_01_0154 -
           1764554-1764727,1764829-1764927,1765710-1766172,
           1766255-1766541
          Length = 340

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +1

Query: 64  VNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVNDPIESSTGASATEVINDEALV 237
           V DV  SS       + N  VS G+KT ++ P+V     ++  +  + T V+ND  L+
Sbjct: 157 VEDVEISSQTLKVLTIKNTHVSYGNKTTISTPSVTY---LKLWSPLNGTYVLNDMPLL 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,098,160
Number of Sequences: 37544
Number of extensions: 211351
Number of successful extensions: 530
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)