Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29l23
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0202 - 1638978-1639571                                           41   0.001
02_01_0158 - 1103461-1104186                                           39   0.005
06_01_0584 - 4178391-4178732,4178854-4178915,4180361-4180481,418...    28   8.6  
02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75...    28   8.6  

>08_01_0202 - 1638978-1639571
          Length = 197

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = +1

Query: 190 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE-YVPLPGDEVI 321
           G +K F   KG GF+ P+ GGED+F+H S ++ + Y  L   +V+
Sbjct: 8   GTVKWFDATKGFGFITPDDGGEDLFVHQSSLKSDGYRSLNDGDVV 52


>02_01_0158 - 1103461-1104186
          Length = 241

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +1

Query: 190 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE 291
           G +K F   KG GF+ P+ G ED+F+H S I+ +
Sbjct: 9   GTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKAD 42


>06_01_0584 -
           4178391-4178732,4178854-4178915,4180361-4180481,
           4180592-4180732,4180830-4180959,4182306-4182436,
           4182528-4182601,4182680-4182741,4183135-4183209,
           4184658-4184760,4184835-4184991,4185549-4185743,
           4186204-4186282,4186697-4186806,4187249-4187374,
           4187475-4187541,4187622-4187791,4187880-4188018,
           4188361-4188522,4188672-4188772,4188852-4188994,
           4189438-4189537,4190364-4190414,4191062-4191169,
           4191279-4191494,4191585-4191721,4191820-4191915,
           4192017-4192234,4192764-4192925,4193006-4193163,
           4194221-4194379
          Length = 1364

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 465 TKKVTYLGFLIVTEVVRPT*RVSPE*DELCAHGQLEIFE 349
           TKK   L  L+V  + + T  V  E D++  HG  E+F+
Sbjct: 749 TKKKMVLEHLVVGRLTKGTNIVQEELDDIIRHGSKELFD 787


>02_01_0102 -
           749122-749799,750123-750371,750753-750851,751380-751889,
           752025-753905,754093-754296,754807-754899,755036-755122,
           755241-755328,755533-755645,755943-757259,757398-758672,
           759166-759273
          Length = 2233

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 109 QLPSPIITRRNRTASTSERALGNPLETGKI 198
           Q+  P +T R R+A++S    G P+E+G I
Sbjct: 487 QVSGPPVTNRERSATSSADEHGRPVESGGI 516


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,152,446
Number of Sequences: 37544
Number of extensions: 382898
Number of successful extensions: 843
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)