Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29l23
(719 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY060441-1|AAL25480.1| 143|Drosophila melanogaster LD47312p pro... 144 1e-34
AE014296-2798|AAN11740.1| 143|Drosophila melanogaster CG9705-PB... 144 1e-34
AE014296-2797|AAF49414.1| 143|Drosophila melanogaster CG9705-PA... 144 1e-34
AY118360-1|AAM48389.1| 195|Drosophila melanogaster RE05342p pro... 38 0.018
AF521096-1|AAM77748.1| 195|Drosophila melanogaster RNA-binding ... 38 0.018
AE014296-983|AAF50758.2| 195|Drosophila melanogaster CG17334-PA... 38 0.018
AY058777-1|AAL14006.1| 721|Drosophila melanogaster SD06355p pro... 33 0.39
AE014134-872|AAX52655.1| 690|Drosophila melanogaster CG14039-PE... 33 0.39
AE014134-871|AAX52654.1| 721|Drosophila melanogaster CG14039-PF... 33 0.39
AE014134-870|AAF52216.2| 721|Drosophila melanogaster CG14039-PA... 33 0.39
AY051878-1|AAK93302.1| 806|Drosophila melanogaster LD37025p pro... 31 1.2
AE014296-1456|AAF50415.2| 1039|Drosophila melanogaster CG7015-PA... 31 1.2
BT012663-1|AAT08469.1| 1057|Drosophila melanogaster RE66582p pro... 31 1.6
U49120-1|AAB94634.1| 359|Drosophila melanogaster Y-box protein ... 30 2.8
AY061440-1|AAL28988.1| 352|Drosophila melanogaster LD37574p pro... 30 2.8
AE014296-2093|AAF49961.3| 352|Drosophila melanogaster CG5654-PA... 30 2.8
>AY060441-1|AAL25480.1| 143|Drosophila melanogaster LD47312p
protein.
Length = 143
Score = 144 bits (348), Expect = 1e-34
Identities = 63/86 (73%), Positives = 72/86 (83%)
Frame = +1
Query: 97 NSHLQLPSPIITRRNRTASTSERALGNPLETGKIKTFCREKGHGFVKPEKGGEDIFLHIS 276
N+ LQLPSPIITRR RTASTS RAL NP+ TG +K+F R KGHGF+ P GGED+F H+S
Sbjct: 26 NASLQLPSPIITRRTRTASTSARALENPVVTGMVKSFSRTKGHGFITPNAGGEDVFCHVS 85
Query: 277 DIEGEYVPLPGDEVIYRLCPIPPKFE 354
DIEGEYVP+PGDEV YRLC IPPK+E
Sbjct: 86 DIEGEYVPMPGDEVKYRLCAIPPKYE 111
Score = 42.3 bits (95), Expect = 6e-04
Identities = 18/28 (64%), Positives = 20/28 (71%)
Frame = +3
Query: 339 PT*VRKFQAVHVRIIHLTPEKHVKWDEP 422
P K QAVHV+I HLTPE H KW+EP
Sbjct: 107 PPKYEKHQAVHVQISHLTPEVHHKWEEP 134
>AE014296-2798|AAN11740.1| 143|Drosophila melanogaster CG9705-PB,
isoform B protein.
Length = 143
Score = 144 bits (348), Expect = 1e-34
Identities = 63/86 (73%), Positives = 72/86 (83%)
Frame = +1
Query: 97 NSHLQLPSPIITRRNRTASTSERALGNPLETGKIKTFCREKGHGFVKPEKGGEDIFLHIS 276
N+ LQLPSPIITRR RTASTS RAL NP+ TG +K+F R KGHGF+ P GGED+F H+S
Sbjct: 26 NASLQLPSPIITRRTRTASTSARALENPVVTGMVKSFSRTKGHGFITPNAGGEDVFCHVS 85
Query: 277 DIEGEYVPLPGDEVIYRLCPIPPKFE 354
DIEGEYVP+PGDEV YRLC IPPK+E
Sbjct: 86 DIEGEYVPMPGDEVKYRLCAIPPKYE 111
Score = 42.3 bits (95), Expect = 6e-04
Identities = 18/28 (64%), Positives = 20/28 (71%)
Frame = +3
Query: 339 PT*VRKFQAVHVRIIHLTPEKHVKWDEP 422
P K QAVHV+I HLTPE H KW+EP
Sbjct: 107 PPKYEKHQAVHVQISHLTPEVHHKWEEP 134
>AE014296-2797|AAF49414.1| 143|Drosophila melanogaster CG9705-PA,
isoform A protein.
Length = 143
Score = 144 bits (348), Expect = 1e-34
Identities = 63/86 (73%), Positives = 72/86 (83%)
Frame = +1
Query: 97 NSHLQLPSPIITRRNRTASTSERALGNPLETGKIKTFCREKGHGFVKPEKGGEDIFLHIS 276
N+ LQLPSPIITRR RTASTS RAL NP+ TG +K+F R KGHGF+ P GGED+F H+S
Sbjct: 26 NASLQLPSPIITRRTRTASTSARALENPVVTGMVKSFSRTKGHGFITPNAGGEDVFCHVS 85
Query: 277 DIEGEYVPLPGDEVIYRLCPIPPKFE 354
DIEGEYVP+PGDEV YRLC IPPK+E
Sbjct: 86 DIEGEYVPMPGDEVKYRLCAIPPKYE 111
Score = 42.3 bits (95), Expect = 6e-04
Identities = 18/28 (64%), Positives = 20/28 (71%)
Frame = +3
Query: 339 PT*VRKFQAVHVRIIHLTPEKHVKWDEP 422
P K QAVHV+I HLTPE H KW+EP
Sbjct: 107 PPKYEKHQAVHVQISHLTPEVHHKWEEP 134
>AY118360-1|AAM48389.1| 195|Drosophila melanogaster RE05342p
protein.
Length = 195
Score = 37.5 bits (83), Expect = 0.018
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Frame = +1
Query: 130 TRRNRTASTSERALGNPLET------GKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 285
T ++ T+S + L +P E GK K F KG GF+ P GG+++F+H S I+
Sbjct: 15 TSQSSTSSANPANLASPTEECGCVRLGKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQ 72
>AF521096-1|AAM77748.1| 195|Drosophila melanogaster RNA-binding
protein LIN-28 protein.
Length = 195
Score = 37.5 bits (83), Expect = 0.018
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Frame = +1
Query: 130 TRRNRTASTSERALGNPLET------GKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 285
T ++ T+S + L +P E GK K F KG GF+ P GG+++F+H S I+
Sbjct: 15 TSQSSTSSANPANLASPTEECGCVRLGKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQ 72
>AE014296-983|AAF50758.2| 195|Drosophila melanogaster CG17334-PA
protein.
Length = 195
Score = 37.5 bits (83), Expect = 0.018
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Frame = +1
Query: 130 TRRNRTASTSERALGNPLET------GKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 285
T ++ T+S + L +P E GK K F KG GF+ P GG+++F+H S I+
Sbjct: 15 TSQSSTSSANPANLASPTEECGCVRLGKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQ 72
>AY058777-1|AAL14006.1| 721|Drosophila melanogaster SD06355p
protein.
Length = 721
Score = 33.1 bits (72), Expect = 0.39
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +1
Query: 70 NSDDSPNKTNSHLQLPSPIITRRNRTASTSERALGNPLETGKIKTFCREKGHGF 231
+++DS + + ++P P + R R+AS R GNP E G C G GF
Sbjct: 26 SAEDSHTASTTPTRIPHPAVARFRRSASL--RLRGNPAELGLRAEHCPAGGGGF 77
>AE014134-872|AAX52655.1| 690|Drosophila melanogaster CG14039-PE,
isoform E protein.
Length = 690
Score = 33.1 bits (72), Expect = 0.39
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +1
Query: 70 NSDDSPNKTNSHLQLPSPIITRRNRTASTSERALGNPLETGKIKTFCREKGHGF 231
+++DS + + ++P P + R R+AS R GNP E G C G GF
Sbjct: 26 SAEDSHTASTTPTRIPHPAVARFRRSASL--RLRGNPAELGLRAEHCPAGGGGF 77
>AE014134-871|AAX52654.1| 721|Drosophila melanogaster CG14039-PF,
isoform F protein.
Length = 721
Score = 33.1 bits (72), Expect = 0.39
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +1
Query: 70 NSDDSPNKTNSHLQLPSPIITRRNRTASTSERALGNPLETGKIKTFCREKGHGF 231
+++DS + + ++P P + R R+AS R GNP E G C G GF
Sbjct: 26 SAEDSHTASTTPTRIPHPAVARFRRSASL--RLRGNPAELGLRAEHCPAGGGGF 77
>AE014134-870|AAF52216.2| 721|Drosophila melanogaster CG14039-PA,
isoform A protein.
Length = 721
Score = 33.1 bits (72), Expect = 0.39
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +1
Query: 70 NSDDSPNKTNSHLQLPSPIITRRNRTASTSERALGNPLETGKIKTFCREKGHGF 231
+++DS + + ++P P + R R+AS R GNP E G C G GF
Sbjct: 26 SAEDSHTASTTPTRIPHPAVARFRRSASL--RLRGNPAELGLRAEHCPAGGGGF 77
>AY051878-1|AAK93302.1| 806|Drosophila melanogaster LD37025p
protein.
Length = 806
Score = 31.5 bits (68), Expect = 1.2
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Frame = +1
Query: 124 IITRRNRTASTSERALGNPLETGKIK-TFCREK-GHGFVKPEKGGEDIFLHISDIEGEYV 297
I T + L NP + K + C K GF++ ++IF H S+ EG
Sbjct: 89 IATNQRGNLGACHIRLENPAQPVKYRGVVCSMKESFGFIERADVVKEIFFHFSEAEGNVE 148
Query: 298 PLPGDEVIYRL-----CPIPPKFENF 360
PGD+V + + +PP+ F
Sbjct: 149 LRPGDDVEFTIQTRSSASVPPQGREF 174
>AE014296-1456|AAF50415.2| 1039|Drosophila melanogaster CG7015-PA
protein.
Length = 1039
Score = 31.5 bits (68), Expect = 1.2
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Frame = +1
Query: 124 IITRRNRTASTSERALGNPLETGKIK-TFCREK-GHGFVKPEKGGEDIFLHISDIEGEYV 297
I T + L NP + K + C K GF++ ++IF H S+ EG
Sbjct: 322 IATNQRGNLGACHIRLENPAQPVKYRGVVCSMKESFGFIERADVVKEIFFHFSEAEGNVE 381
Query: 298 PLPGDEVIYRL-----CPIPPKFENF 360
PGD+V + + +PP+ F
Sbjct: 382 LRPGDDVEFTIQTRSSASVPPQGREF 407
>BT012663-1|AAT08469.1| 1057|Drosophila melanogaster RE66582p
protein.
Length = 1057
Score = 31.1 bits (67), Expect = 1.6
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = +1
Query: 124 IITRRNRTASTSERALGNPLETGKIK-TFCREK-GHGFVKPEKGGEDIFLHISDIEGEYV 297
I T + L NP + K + C K GF++ ++IF H S+ EG
Sbjct: 322 IATNQRGNLGACHIRLENPAQPVKYRGVVCSMKESFGFIERADVVKEIFFHFSEAEGNVE 381
Query: 298 PLPGDEVIYRL 330
PGD+V + +
Sbjct: 382 LRPGDDVEFTI 392
>U49120-1|AAB94634.1| 359|Drosophila melanogaster Y-box protein
protein.
Length = 359
Score = 30.3 bits (65), Expect = 2.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 187 TGKIKTFCREKGHGFVKPEKGGEDIFLHISDI 282
TG +K F + G+GF+ ED+F+H S I
Sbjct: 64 TGTVKWFNVKSGYGFINRNDTREDVFVHQSAI 95
>AY061440-1|AAL28988.1| 352|Drosophila melanogaster LD37574p
protein.
Length = 352
Score = 30.3 bits (65), Expect = 2.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 187 TGKIKTFCREKGHGFVKPEKGGEDIFLHISDI 282
TG +K F + G+GF+ ED+F+H S I
Sbjct: 63 TGTVKWFNVKSGYGFINRNDTREDVFVHQSAI 94
>AE014296-2093|AAF49961.3| 352|Drosophila melanogaster CG5654-PA
protein.
Length = 352
Score = 30.3 bits (65), Expect = 2.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 187 TGKIKTFCREKGHGFVKPEKGGEDIFLHISDI 282
TG +K F + G+GF+ ED+F+H S I
Sbjct: 63 TGTVKWFNVKSGYGFINRNDTREDVFVHQSAI 94
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,313,689
Number of Sequences: 53049
Number of extensions: 682247
Number of successful extensions: 1353
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1353
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3211306956
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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