Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29l22
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    31   0.12 
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    29   0.83 
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    27   1.9  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    27   1.9  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    27   2.5  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    26   4.4  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    26   4.4  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    26   4.4  
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch...    26   5.8  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    26   5.8  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   7.7  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    25   7.7  

>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 15/64 (23%), Positives = 33/64 (51%)
 Frame = -2

Query: 674 EPRHQPVRLHGRQPYKWNVEYRSITSTQFAIHPLNDNNIEGLIRVLEQLFNLLMLQSSFL 495
           +  + P  L  +QP+ + +  +++  ++F  H L DN+ E   ++L    +L +   SF 
Sbjct: 489 QANNDPNNLEKQQPHSFPLRKQNVAQSEFPKHSLRDNS-ENAPQILSSFHDLSLQNESFD 547

Query: 494 YLFH 483
            +F+
Sbjct: 548 EMFN 551


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 16/52 (30%), Positives = 30/52 (57%)
 Frame = +3

Query: 420  DLKRVLDKEVNVIDNGFMFYFMKQIQEATLEHEQVKKLLEDPNKTFDIVIVE 575
            +LK +L+++ N +    M   M+Q+ +A  E  +V   L+   K +D++IVE
Sbjct: 989  ELKELLEEKENALI--MMEEEMRQVNDANTELLRVNATLKSQLKNYDMIIVE 1038


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +3

Query: 426 KRVLDKEVNVIDNGFMFYFMKQIQEATLEHEQVKKLLEDPNKTFDIVIVE-WMYCELGAS 602
           +R L+    ++D   +  F   I    L      K+LE  +  FD  + E W++C LG  
Sbjct: 62  RRCLNLRKRLMDISELAAFFDSIHREALNSSF--KILEFKDIEFDDPVTEIWLFCRLGYP 119

Query: 603 YAAVFD 620
             A+F+
Sbjct: 120 LCALFN 125


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 566 NNIEGLIRVL-EQLFNLLMLQSSFLYLFHEIKHKPVVYYVYLF 441
           N++   IR +   LF L +    + Y+ H+ KH P  Y VY F
Sbjct: 155 NSMASRIRNIGSALFVLTIFPLIYWYIQHKFKHIPGAYTVYAF 197


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = -2

Query: 620 VEYRSITSTQFAIHPLNDNNIEGLIRVLEQLFNLLMLQSSFLYLFHEIKHKPVVYYVY 447
           +EY    +T FAI     ++I  L  VL  L +L ++   +  L H ++ + + + +Y
Sbjct: 519 IEYTEDFATGFAISGEISHSINNLEFVLYSLSSLFLMMLKWFRLSHVLRFERLAFLLY 576


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +3

Query: 477 YFMKQIQEATLEHEQVKKLLEDPNKTFDIVIVEWMYCELGASYAAVFDVPLIWLSTMEP 653
           Y M+QI +  +   +V   L DP++   +  +E    E+G      F+  L W+S   P
Sbjct: 573 YLMRQIVQIFVSIGRVSDFLNDPDEVDPVNTIEDTSQEIG-----FFNASLTWVSNPSP 626


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = +3

Query: 492 IQEATLEHEQVKKLLEDPNKTFDIVIVEWMYCELGASYAAVFDVPL---IWLST 644
           IQ +TLE     KL +  +K +D+  V W            FDV +    W+ST
Sbjct: 155 IQVSTLETTDPNKLWKVSSKQYDLREVTWFLDHSSLISRLYFDVKIDTFFWMST 208


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -3

Query: 514 CSRVASCICFMK*NINPLSITFTSLSRTLFKSNPPLGIKRIL 389
           C ++  C+  +K       IT       LF+ NP  G++ +L
Sbjct: 98  CEKIVLCLVLLKNKTVISPITLLQCFFPLFRENPTRGVRELL 139


>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
           dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -2

Query: 635 PYKWN-VEYRSITSTQFAIHPLNDNNIEGLIRVLEQLF-NLLMLQSSFLYLFHEIKHKPV 462
           P  WN +EYR +    +AI P N   I G +     L  N+++++ S     H +    +
Sbjct: 171 PGVWNRMEYRPLEGFVYAITPFNFTAIAGNLAAAPLLMGNVVLMKPS----DHAVLSSYI 226

Query: 461 VYYVY 447
           VY ++
Sbjct: 227 VYQIF 231


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +3

Query: 534 LEDPNKTFDIVIVEWMYCELGASYAAVFD 620
           LE PN  FD++I++ ++ E+ +    +++
Sbjct: 99  LEHPNNFFDVIILQTVFSEISSKSIPLYN 127


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -3

Query: 463  LSITFTSLSR-TLFKSNPPLGIKRILLLTST*VRFGW*LSSTKGVTYVTS*PAFRRCFTT 287
            +++ FT +   TL     P+ ++  +   +T +R    L +T G    T   AF  CF T
Sbjct: 1331 IAMVFTDIKNSTLLWERHPIAMRSAIKTHNTIMRRQ--LRATGGYEVKTEGDAFMVCFQT 1388

Query: 286  LYPRILW 266
            +   +LW
Sbjct: 1389 VPAALLW 1395


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 126 DFLLLYCVYDQKENMFKLTFLVCCILATQSVSDAYKILVVF 248
           D+L ++C   +K ++  L  L+C  L   +   A KIL  F
Sbjct: 380 DYLFMHCNNGEKTSLHLLRTLICMKLDFSNAQLAAKILFHF 420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,797,680
Number of Sequences: 5004
Number of extensions: 59378
Number of successful extensions: 180
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)