Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29l22
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0792 + 6166230-6166795,6166879-6166981,6167089-6167227,616... 32 0.37
07_01_0722 + 5522862-5523410 29 3.4
07_01_0720 + 5512638-5513141,5513588-5514607 29 3.4
09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,689... 29 4.5
07_01_1177 + 11125945-11126242,11126465-11128303,11128342-11128358 29 4.5
06_03_1297 + 29110432-29110542,29110613-29110804,29110893-291109... 29 4.5
02_01_0326 - 2230617-2230735,2231430-2231493,2231646-2231849,223... 29 4.5
02_02_0648 - 12619468-12619874,12621432-12621512,12621607-126217... 28 6.0
>07_01_0792 +
6166230-6166795,6166879-6166981,6167089-6167227,
6167641-6167918,6168448-6168612
Length = 416
Score = 32.3 bits (70), Expect = 0.37
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 231 KILVVFPMPGKSHSILGYSVVKHLLKAGHEVTYVT 335
K +++ G H+++G+ + K LL AGH VT +T
Sbjct: 71 KSVLIVNTNGGGHAVIGFYLAKDLLAAGHAVTVLT 105
>07_01_0722 + 5522862-5523410
Length = 182
Score = 29.1 bits (62), Expect = 3.4
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +3
Query: 204 ATQSVSDAYKILVVFPMPGKSHSILGYSVVKHLLKAGHEVTYV-TPFVEDNHHPNLTQVD 380
++ S S + +VVFP H I + K L GH VT+V TP +
Sbjct: 19 SSSSSSSSPLHIVVFPWLAFGHMIPFLELSKRLASRGHAVTFVSTP--RNAARLGAIPPA 76
Query: 381 VSSNMRLIPKGGLDLKRV 434
+S+N+R++P LDL V
Sbjct: 77 LSANLRVVP---LDLPAV 91
>07_01_0720 + 5512638-5513141,5513588-5514607
Length = 507
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +3
Query: 204 ATQSVSDAYKILVVFPMPGKSHSILGYSVVKHLLKAGHEVTYVT 335
A S S + +VVFP H I + K L GH VT+VT
Sbjct: 15 AAASSSSSPLHIVVFPWLAFGHMIPFLELSKRLASRGHAVTFVT 58
>09_02_0286 -
6898041-6898144,6898881-6899005,6899158-6899207,
6899245-6899386,6899951-6900020,6900077-6900216,
6900291-6900365,6901083-6904723
Length = 1448
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = +3
Query: 273 ILGYSVVKHLLKAGHEVTYVTPFVEDNHHPNLTQVDVSSNMRLIPKGGLDLKRVLDKEVN 452
++G+S ++ L AG+E T P + ++D+SSN RL+ G L K +
Sbjct: 324 LVGFSSLRRLALAGNEFTGAIPVELGQLCGRIVELDLSSN-RLV--GALPASFAKCKSLE 380
Query: 453 VIDNG 467
V+D G
Sbjct: 381 VLDLG 385
>07_01_1177 + 11125945-11126242,11126465-11128303,11128342-11128358
Length = 717
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/60 (25%), Positives = 26/60 (43%)
Frame = +1
Query: 472 CFIS*NKYRKLLWSMSKLKSCSRTRIRPSILLSLSGCIANWVLVMLRYSTFHLYGCRPWS 651
C +S + K W+ + +C PSI L+ I W + YS ++GC ++
Sbjct: 528 CMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIEVWSGMPADYSQLRVFGCTAYA 587
>06_03_1297 +
29110432-29110542,29110613-29110804,29110893-29110976,
29111115-29111191,29111410-29111476,29111640-29111697,
29111823-29111890,29111981-29112043,29112549-29112651,
29112685-29112845,29112934-29113053,29113300-29113356,
29113646-29113809,29113896-29114055,29114720-29114803,
29115074-29115196,29115368-29115498,29115577-29115658,
29115876-29115963,29116143-29116186,29116264-29116387,
29116450-29116537,29116649-29116849,29116894-29117104,
29117383-29117454,29117587-29117790,29117959-29118087
Length = 1021
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 258 GKSHSILGYSVVKHLLKAGHEVTYVTPFVE 347
G H+ VV+HL+ AGHEV T E
Sbjct: 28 GFGHATRAIEVVRHLIAAGHEVHVATAVPE 57
>02_01_0326 -
2230617-2230735,2231430-2231493,2231646-2231849,
2231945-2232016,2232293-2232458,2232543-2232758,
2232873-2232949,2233056-2233151,2233237-2233280,
2233435-2233522,2233805-2233886,2233961-2234091,
2234264-2234350,2234804-2234887,2234985-2235144,
2235251-2235414,2235757-2235762,2235823-2235879,
2236159-2236278,2236387-2236496,2236587-2236689,
2236789-2236842,2237106-2237168,2237258-2237325,
2237412-2237469,2237684-2237750,2238233-2238309,
2238433-2238516,2238652-2238828,2239010-2239144
Length = 1010
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 258 GKSHSILGYSVVKHLLKAGHEVTYVT 335
G H+ VV+HL+ AGH+V VT
Sbjct: 36 GFGHATRALEVVRHLIAAGHDVHVVT 61
>02_02_0648 -
12619468-12619874,12621432-12621512,12621607-12621716,
12621896-12622164,12622440-12622567,12622637-12622699,
12623196-12623493
Length = 451
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -1
Query: 381 HQLES-GSGGDCPQRKELHMSPHDQLLGDASRHCTP 277
H + S G+ G P+R EL+ D L RHC P
Sbjct: 166 HNIRSFGTDGSNPKRLELYFYDDDPTLEHRYRHCRP 201
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,686,567
Number of Sequences: 37544
Number of extensions: 371371
Number of successful extensions: 958
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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