Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29l16
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.10 |srb7|med21|mediator complex subunit Srb7 |Schizosac...    31   0.23 
SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo...    28   1.6  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   2.9  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    26   6.6  

>SPBC1604.10 |srb7|med21|mediator complex subunit Srb7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 138

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = +1

Query: 148 MADRLTQLQDTINQQAENFCNSIGILQQFSLPSKFPGFER 267
           MA R TQLQDTI++ A  F +SI  L         PG E+
Sbjct: 1   MACRCTQLQDTIDEVATQFYSSIHYLSSHHDFVPLPGQEK 40


>SPBC582.07c |rpn7||19S proteasome regulatory subunit
           Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 409

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 445 EAAEQLEEVVRQGEILLEKIQ 507
           E   Q +EVV+QG++LL K+Q
Sbjct: 376 EKNRQYQEVVKQGDVLLNKLQ 396


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 19/61 (31%), Positives = 34/61 (55%)
 Frame = -3

Query: 213  AVTKILSLLVYGILKLS*AISHYSIQIFILLTTVKI*SLYGYFLWKVVLSYLQYQFVKLP 34
            A+ +IL    Y +  LS   +  ++ ++ILL+     SL+ +FL +VV +  +Y  + LP
Sbjct: 1944 AIGQILGASSYQLTLLSGESAQSTVSMYILLSIFSFFSLFWWFLSRVVQA--RY-ILSLP 2000

Query: 33   F 31
            F
Sbjct: 2001 F 2001


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 609 VLPTVVSSTKGYVKTRIHGSIL 674
           +L  +V STK  ++ ++HG+IL
Sbjct: 40  ILQKLVDSTKDIIENKVHGNIL 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,624,647
Number of Sequences: 5004
Number of extensions: 47538
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)