Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29l16
         (749 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0882 + 28467691-28467730,28468386-28468675,28469262-284694...    30   2.3  
12_01_0249 + 1850443-1851030                                           29   3.0  
11_01_0250 + 1924261-1924848                                           29   3.0  
01_05_0704 - 24412720-24412883,24412884-24412959                       29   3.0  
03_04_0147 + 17690840-17691687,17692328-17692532,17693048-176931...    28   9.1  

>03_05_0882 +
           28467691-28467730,28468386-28468675,28469262-28469411,
           28470126-28470214,28470331-28470440,28470545-28470639,
           28471110-28471162,28471374-28471539,28471909-28472001,
           28472304-28472432,28472549-28472668,28472862-28472942,
           28473495-28473602,28473895-28474038,28474120-28474218,
           28474300-28474379,28474830-28474922,28475197-28475320
          Length = 687

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/46 (34%), Positives = 30/46 (65%)
 Frame = +1

Query: 406 QVQSLRRLEAENKEAAEQLEEVVRQGEILLEKIQGALSDIAQCQLD 543
           Q  ++RRLE  N++  +Q+EE VR+   ++E  Q +L++ +Q  L+
Sbjct: 143 QQATIRRLEERNRQLEQQMEEKVRE---MVEMKQRSLAEDSQKTLE 185


>12_01_0249 + 1850443-1851030
          Length = 195

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 415 SLRRLEAENKEAAEQLEEVVRQGEILLEKIQGALSD 522
           +LRR+ +  +E A  L E    GE++LE+I  A +D
Sbjct: 90  ALRRIVSSKEELAAMLAEADYAGELVLEEIAAAAAD 125


>11_01_0250 + 1924261-1924848
          Length = 195

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 415 SLRRLEAENKEAAEQLEEVVRQGEILLEKIQGALSD 522
           +LRR+ +  +E A  L E    GE++LE+I  A +D
Sbjct: 90  ALRRIVSSKEELAAMLAEAECAGELVLEEIAAAAAD 125


>01_05_0704 - 24412720-24412883,24412884-24412959
          Length = 79

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 616 GRTPDPIPITVVSHPC*GSEPDSACPTGT 530
           G+TPDPIP++V   P     P S+ P GT
Sbjct: 48  GQTPDPIPLSVAG-PAEALPPPSSQPHGT 75


>03_04_0147 +
           17690840-17691687,17692328-17692532,17693048-17693199,
           17693306-17693597,17693807-17693962,17694561-17694764,
           17694875-17694987,17695078-17695192,17695293-17695382,
           17695463-17695666,17695764-17695859,17696094-17696216,
           17696308-17696400,17696477-17696641,17697179-17697268,
           17697356-17697520
          Length = 1036

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 106 LILIWIFSMEGGFKLPTVSICKTTF 32
           L+++W   + GGFK+P  S C   F
Sbjct: 565 LMILWSVDLVGGFKMPLPSQCPKEF 589


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,262,070
Number of Sequences: 37544
Number of extensions: 293628
Number of successful extensions: 659
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)