Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29l11
(734 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 292 2e-79
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 281 4e-76
06_03_1014 - 26902971-26903085,26903182-26903270,26904302-269043... 41 0.001
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 40 0.002
05_05_0256 - 23647736-23648947 29 2.9
07_03_0982 + 23116343-23117089,23117227-23117313,23117424-231175... 29 3.8
11_08_0092 - 28307180-28307380,28307471-28307936,28308008-283081... 29 5.1
07_03_0894 + 22362717-22363514 29 5.1
03_02_0243 - 6744164-6744415,6744518-6745135 29 5.1
02_01_0516 + 3727742-3727936,3729115-3729192,3729292-3729552,372... 29 5.1
04_04_0147 - 23109072-23109372,23109638-23109752,23109885-231099... 28 6.7
03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399 28 6.7
10_08_0527 - 18555231-18555882,18556334-18556463,18557073-18557175 28 8.8
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 292 bits (716), Expect = 2e-79
Identities = 144/193 (74%), Positives = 158/193 (81%), Gaps = 2/193 (1%)
Frame = +3
Query: 162 LTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFEGTSG 341
+ Y+TVSGV GPLVILD+VK PK+ EIV ++L DGT R GQVLEV G KAVVQVFEGTSG
Sbjct: 59 MEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSG 118
Query: 342 IDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPINPWSRI 521
ID K T +FTG++L+TPVS DMLGR+FNGSGKPID GPPIL E +LDI G INP R
Sbjct: 119 IDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERT 178
Query: 522 YPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVK--VPGKSVLD 695
YPEEMIQTGIS IDVMNSIARGQKIP+FSAAGLPHNEIAAQICRQAGLVK GK
Sbjct: 179 YPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKSLEKGKHAEG 238
Query: 696 DHEDNFAIVFAAM 734
+DNFAIVFAAM
Sbjct: 239 GEDDNFAIVFAAM 251
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 281 bits (689), Expect = 4e-76
Identities = 147/203 (72%), Positives = 161/203 (79%), Gaps = 12/203 (5%)
Frame = +3
Query: 162 LTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFEGTSG 341
+ Y+TVSGV GPLVILD+VK PK+ EIV ++L DGT R GQVLEV G KAVVQVFEGTSG
Sbjct: 19 MEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSG 78
Query: 342 IDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQ---------G 494
ID K T +FTG++L+TPVS DMLGRVFNGSGKPID GPPIL E +LDI G
Sbjct: 79 IDNKYTTVQFTGEVLKTPVSLDMLGRVFNGSGKPIDNGPPILPEAYLDISDFDIGFAGAG 138
Query: 495 QPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKV 674
INP R YPEEMIQTGIS IDVMNSIARGQKIP+FSAAGLPHNEIAAQICRQAGLVK
Sbjct: 139 SSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKR 198
Query: 675 PGKS--VLDDHED-NFAIVFAAM 734
KS +L+ ED NFAIVFAAM
Sbjct: 199 LEKSDNILESSEDENFAIVFAAM 221
>06_03_1014 -
26902971-26903085,26903182-26903270,26904302-26904380,
26904488-26904585,26904848-26904952,26905031-26905117,
26905218-26905412,26905890-26905996,26906559-26906754,
26906865-26906966,26907100-26907171,26907404-26907505,
26907638-26907675,26907769-26907880,26907972-26908028,
26908122-26908177,26908283-26908409,26908856-26908910,
26908919-26909049
Length = 640
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/90 (26%), Positives = 48/90 (53%)
Frame = +3
Query: 177 VSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFEGTSGIDAKN 356
V V+GP+V+ D + E+V++ D + G+++ + G A +QV+E T+G+ +
Sbjct: 60 VLAVSGPVVVADGMGGAAMYELVRVG-NDNLI--GEIIRLEGDSATIQVYEETAGLMVND 116
Query: 357 TLCEFTGDILRTPVSEDMLGRVFNGSGKPI 446
+ T L + +LG +F+G +P+
Sbjct: 117 PVLR-TRKPLSVELGPGILGNIFDGIQRPL 145
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 40.3 bits (90), Expect = 0.002
Identities = 26/103 (25%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Frame = +3
Query: 150 SQPRLTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFE 329
S+ Y V V+GP+V+ D + E+V++ D + G+++ + G A +QV+E
Sbjct: 13 SEKESEYGYVRKVSGPVVVADGMGGAAMYELVRVG-HDNLI--GEIIRLEGDSATIQVYE 69
Query: 330 GTSGIDAKNTLCEFTGDILRTPVSEDM----LGRVFNGSGKPI 446
T+G+ + + + P+S ++ LG +F+G +P+
Sbjct: 70 ETAGLMVNDPVLRTRKVMPAQPLSVELGPGILGNIFDGIQRPL 112
>05_05_0256 - 23647736-23648947
Length = 403
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 652 DRPVLSRSPASQSWTTTRTTS 714
D P L +PAS SWTTT +T+
Sbjct: 328 DYPGLGSAPASTSWTTTESTT 348
>07_03_0982 +
23116343-23117089,23117227-23117313,23117424-23117555,
23118135-23118269,23118644-23118709,23118797-23118907,
23119237-23119329,23119555-23119659,23119752-23119829
Length = 517
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -3
Query: 159 WAGK*SPWRLPGHVPWSPGRERSPLPFFSFHL*AVCSIKHQTAPACSP 16
+AG P+ P P+ P +P P++S+ + Q APA P
Sbjct: 73 YAGYAPPYNNPNPAPYPPESSPAPAPYYSYPP-TAAGVATQHAPAAEP 119
>11_08_0092 -
28307180-28307380,28307471-28307936,28308008-28308117,
28308206-28308493,28309024-28309059
Length = 366
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 138 WRLPGHVPWSPGRERSPLPFF 76
WR+ GH+P G R P+ FF
Sbjct: 252 WRVQGHLPQRQGPRRVPIDFF 272
>07_03_0894 + 22362717-22363514
Length = 265
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -2
Query: 475 SSAKIGGPLSMGLPEPLNTRPNMSSETGVRRMSPVNSQSVFFASIPDV 332
SSA L+ GLP + R +++ E GVR + ++S F A P +
Sbjct: 56 SSAAKADALAAGLPRAVAVRADVADEAGVRSLFDA-AESAFGAGAPHI 102
>03_02_0243 - 6744164-6744415,6744518-6745135
Length = 289
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -2
Query: 247 CTISENLGNLTSSKMTRGPFTPDTVL*VSLG 155
C ++E++ L S +T P TPDTVL VS G
Sbjct: 23 CEVNESM--LDSVTVTHAPLTPDTVLEVSGG 51
>02_01_0516 +
3727742-3727936,3729115-3729192,3729292-3729552,
3729921-3730238,3730527-3730685,3730768-3730961,
3731644-3731647
Length = 402
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 189 NGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQV 323
NGP+ + + KF ++ + KLAD T G + G +V V
Sbjct: 321 NGPMGVFEFEKFAAGTDAIAKKLADLTTTKGATTIIGGGDSVAAV 365
>04_04_0147 -
23109072-23109372,23109638-23109752,23109885-23109970,
23111398-23111654
Length = 252
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +3
Query: 522 YPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKVPGKSV 689
+PE +G DV+ ++ G +P AAGL + + AGL +V ++
Sbjct: 25 HPERHFTSGEVVRDVIMGVSDGLTVPFALAAGLSGASAPSSLVLTAGLAEVAAGAI 80
>03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399
Length = 146
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/43 (41%), Positives = 20/43 (46%)
Frame = -1
Query: 476 VLGQDWGTLVDGFAGTVEHATQHVFRDRCTKNVTRELAECVLR 348
VLGQDW + DG V + H R RC RE E V R
Sbjct: 32 VLGQDWKQIEDGRRRPVAVSYSHGRRLRCIAEGRREEEEEVGR 74
>10_08_0527 - 18555231-18555882,18556334-18556463,18557073-18557175
Length = 294
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -2
Query: 436 PEPLNTRPNMSSETGVRRMSPVNSQSVFFASIPDVPSNTWTTALEPLTSS 287
P P P S TG P S PD+P TWTT L+ +T++
Sbjct: 202 PPPPPPPPPPSDATGGEVSIPCFPFSPLPFIEPDLPELTWTTDLDDITAT 251
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,289,983
Number of Sequences: 37544
Number of extensions: 565895
Number of successful extensions: 1686
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1683
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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