Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29l08
(711 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 216 2e-57
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa... 205 6e-54
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 29 0.87
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom... 28 1.1
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe... 28 1.5
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces... 27 3.5
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 26 6.1
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 216 bits (528), Expect = 2e-57
Identities = 103/189 (54%), Positives = 140/189 (74%), Gaps = 14/189 (7%)
Frame = +3
Query: 186 QLALTLKE-----RGYKVGLLXIDLCGPSVPYIL--NLEGHDVHQSAEGWVPVYMDSEQR 344
QLAL+L + R K G+L IDL GPS+P + + E + +HQS+ GWVPVY D +
Sbjct: 25 QLALSLHDSKVYSRPLKTGILDIDLTGPSIPRMFGKDAERNRIHQSSAGWVPVYTDETKE 84
Query: 345 LGVLSIGFLLTSRNDSVVLRGPKKTSIIKQFLXDVYWQELDFLVIDTPPGTSDEHITVME 524
+G++S+GFLLTS+NDSVV RGPKK ++I+QF+ DV W ELDFL+IDTPPGT DEH+T++E
Sbjct: 85 IGLMSLGFLLTSKNDSVVWRGPKKAAMIRQFISDVSWGELDFLIIDTPPGTGDEHLTIVE 144
Query: 525 NL-------RQVPQCSAILVTTPQEVAIEDVRKEITFCRKTGIPIMGLIEHMSGYECPNC 683
+L R VP A++VTTPQ +A DV+KEI FC+K I I+G++E+MSGY CP+C
Sbjct: 145 SLLSETSTVRDVPIDGAVIVTTPQGIATLDVQKEIDFCKKASIKILGIVENMSGYICPHC 204
Query: 684 SECTXIFST 710
++CT IFS+
Sbjct: 205 ADCTNIFSS 213
>SPAC637.08 |||iron-sulfur cluster assembly ATPase
Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 205 bits (500), Expect = 6e-54
Identities = 91/175 (52%), Positives = 130/175 (74%), Gaps = 1/175 (0%)
Frame = +3
Query: 186 QLALTLK-ERGYKVGLLXIDLCGPSVPYILNLEGHDVHQSAEGWVPVYMDSEQRLGVLSI 362
QLA L E ++GL+ +D+CGPS+P I+ +E + HQS++GW P+Y+ L V+SI
Sbjct: 80 QLAWGLSLEEDKQIGLMDVDICGPSIPRIMGVEKEEAHQSSKGWSPIYVCPN--LAVMSI 137
Query: 363 GFLLTSRNDSVVLRGPKKTSIIKQFLXDVYWQELDFLVIDTPPGTSDEHITVMENLRQVP 542
GFLL S + SV+ RGPKK +IKQF+ DV W+ LD+L++DTPPGTSDEH+++++ +
Sbjct: 138 GFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDYLIVDTPPGTSDEHLSLVQFFKNSG 197
Query: 543 QCSAILVTTPQEVAIEDVRKEITFCRKTGIPIMGLIEHMSGYECPNCSECTXIFS 707
A++VTTPQEVA++DVRKEI FCRK IPI+GL+E+MSG+ CP+C + IF+
Sbjct: 198 IDGAVVVTTPQEVALQDVRKEIDFCRKASIPILGLVENMSGFVCPSCKGKSNIFT 252
>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1466
Score = 28.7 bits (61), Expect = 0.87
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 356 VDWIPTNIS**FCCIKGTKKDFHNQTVPXRCLLARARL 469
V W+PT+IS C++G F+ +++ +C + + L
Sbjct: 1228 VRWVPTDISGKPLCLRGRISSFYRKSIHKKCRVGSSLL 1265
>SPBC725.14 |arg6||acetylglutamate synthase Arg6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 456 QELDFLVIDTPPGTSDEHITVMENLRQVPQCSAILVTTPQEVAI 587
QE D L PP I V L+ +P ++ L+TTP++ +
Sbjct: 246 QEFDELAKTLPPYHRKNLILVRRCLKMLPDDASALITTPEDAML 289
>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 746
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 429 KQFLXDVYWQELDFLVIDTPPGTSDEHITVMENLRQVPQC 548
+Q + W+ELD L+I+T P ++ NL P C
Sbjct: 572 RQAIVQECWRELDELIIETNPLIQRATTELINNLSLSPYC 611
>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 583
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -3
Query: 676 GHSYPLICSIRP--IIGMPVFLQNVISLRTSSIATSCGVVTSMAEH 545
G + P + +I+ I G+P VI + T S+A SC S H
Sbjct: 344 GSTSPFVLAIKEANIRGLPSVFNAVIIISTVSVANSCTFTASRTLH 389
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 6.1
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +3
Query: 474 VIDTPPGTSDEHITVMENLRQ-VPQCSAILVTTPQEVAIEDVRKEITFCRKTGIPIMGL 647
+I PPGT H T++E ++Q V + ILV +A++++ ++ +GIP++ L
Sbjct: 229 LIHGPPGTGKTH-TLVEIIQQLVLRNKRILVCGASNLAVDNIVDRLS---SSGIPMVRL 283
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,790,970
Number of Sequences: 5004
Number of extensions: 57248
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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