Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29l08
(711 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0505 - 23534273-23535171,23536545-23536646,23536776-23536842 204 7e-53
04_04_0299 - 24243364-24244259,24244417-24244428,24245092-242451... 203 1e-52
01_06_0521 + 30001662-30001752,30001883-30001999,30002099-300022... 97 2e-20
03_05_0387 + 23708447-23708470,23708616-23708739,23709081-237092... 73 2e-13
09_03_0056 - 11936264-11939677 31 0.90
02_05_0444 - 29073740-29073844,29074417-29074725,29077910-290779... 31 1.2
01_01_0430 + 3258438-3259200,3259929-3261454 29 2.8
12_01_0105 - 823302-823770,823902-824006,824149-824540 28 8.4
06_01_0042 + 410061-410544,411401-411837 28 8.4
05_04_0086 - 17797792-17797810,17798049-17798234,17798319-177984... 28 8.4
>02_04_0505 - 23534273-23535171,23536545-23536646,23536776-23536842
Length = 355
Score = 204 bits (497), Expect = 7e-53
Identities = 91/160 (56%), Positives = 125/160 (78%)
Frame = +3
Query: 186 QLALTLKERGYKVGLLXIDLCGPSVPYILNLEGHDVHQSAEGWVPVYMDSEQRLGVLSIG 365
QL+ L E +VGLL ID+CGPS+P +L LEG D+HQS GW PVY++S LGV+SIG
Sbjct: 89 QLSFALAEMDCQVGLLDIDICGPSIPKMLGLEGQDIHQSNLGWSPVYVESN--LGVMSIG 146
Query: 366 FLLTSRNDSVVLRGPKKTSIIKQFLXDVYWQELDFLVIDTPPGTSDEHITVMENLRQVPQ 545
F+L + +D+V+ RGP+K +IKQFL DV W E+D+LV+D PPGTSDEHI++++ L+
Sbjct: 147 FMLPNPDDAVIWRGPRKNGLIKQFLKDVDWGEIDYLVVDAPPGTSDEHISIVQYLQATGI 206
Query: 546 CSAILVTTPQEVAIEDVRKEITFCRKTGIPIMGLIEHMSG 665
AI+VTTPQ+V++ DVRKEI FC+K G+PI+G++E+MSG
Sbjct: 207 DGAIIVTTPQQVSLIDVRKEINFCKKVGVPILGVVENMSG 246
>04_04_0299 -
24243364-24244259,24244417-24244428,24245092-24245193,
24245298-24245340
Length = 350
Score = 203 bits (495), Expect = 1e-52
Identities = 89/160 (55%), Positives = 126/160 (78%)
Frame = +3
Query: 186 QLALTLKERGYKVGLLXIDLCGPSVPYILNLEGHDVHQSAEGWVPVYMDSEQRLGVLSIG 365
QL+ L E ++VGLL ID+CGPS+P +L LEG D+HQS GW PVY++S LGV+SIG
Sbjct: 85 QLSFALAEMDHQVGLLDIDICGPSIPKMLGLEGQDIHQSNLGWSPVYVESN--LGVMSIG 142
Query: 366 FLLTSRNDSVVLRGPKKTSIIKQFLXDVYWQELDFLVIDTPPGTSDEHITVMENLRQVPQ 545
F+L + +D+V+ RGP+K +IKQFL DV W E+D+LV+D PPGTSDEHI++++ L+
Sbjct: 143 FMLPNPDDAVIWRGPRKNGLIKQFLKDVDWGEIDYLVVDAPPGTSDEHISIVQYLQIAGI 202
Query: 546 CSAILVTTPQEVAIEDVRKEITFCRKTGIPIMGLIEHMSG 665
AI+VTTPQ+V++ DV+KEI FC+K G+P++G++E+MSG
Sbjct: 203 DGAIIVTTPQQVSLIDVKKEINFCKKVGVPVLGVVENMSG 242
>01_06_0521 +
30001662-30001752,30001883-30001999,30002099-30002229,
30002320-30002370,30002639-30002689,30002864-30003007,
30003082-30003224,30003376-30003448,30003540-30003635,
30003737-30003835,30003905-30003958,30004032-30004155,
30004420-30004544,30004720-30004842,30004948-30005028
Length = 500
Score = 96.7 bits (230), Expect = 2e-20
Identities = 55/161 (34%), Positives = 91/161 (56%)
Frame = +3
Query: 189 LALTLKERGYKVGLLXIDLCGPSVPYILNLEGHDVHQSAEGWVPVYMDSEQRLGVLSIGF 368
LA TL G +VG+ D+ GPS+P +++ E + + E + +E LGV + F
Sbjct: 159 LAYTLAGMGARVGIFDADVFGPSLPTMVSPENRLLVMNPES--RSILPTEY-LGVKMVSF 215
Query: 369 LLTSRNDSVVLRGPKKTSIIKQFLXDVYWQELDFLVIDTPPGTSDEHITVMENLRQVPQC 548
+ ++ +RGP + +I Q L W ELD+LVID PPGT D H+T+ + + P
Sbjct: 216 GFAGQGRAI-MRGPMVSGVINQLLTTTDWGELDYLVIDMPPGTGDIHLTLCQVV--APLT 272
Query: 549 SAILVTTPQEVAIEDVRKEITFCRKTGIPIMGLIEHMSGYE 671
+A++VTTPQ++A DV K + K +P + ++E+M ++
Sbjct: 273 AAVIVTTPQKLAFIDVAKGVRMFSKLKVPCVAVVENMCYFD 313
>03_05_0387 +
23708447-23708470,23708616-23708739,23709081-23709203,
23710723-23710820,23711778-23711918,23712236-23712361,
23713316-23713486
Length = 268
Score = 73.3 bits (172), Expect = 2e-13
Identities = 51/162 (31%), Positives = 78/162 (48%)
Frame = +3
Query: 219 KVGLLXIDLCGPSVPYILNLEGHDVHQSAEGWVPVYMDSEQRLGVLSIGFLLTSRNDSVV 398
KVGLL D+ GPS+P ++NL +PV + +SIGFL+ ++ +V
Sbjct: 63 KVGLLDADIYGPSIPTMMNLHAKPEVSEDMRMIPV---DNYGVQCMSIGFLV-DKDAPIV 118
Query: 399 LRGPKKTSIIKQFLXDVYWQELDFLVIDTPPGTSDEHITVMENLRQVPQCSAILVTTPQE 578
RGP S +++ V W LD LV+D PPGT D +++ + LR
Sbjct: 119 WRGPMVMSALEKITRGVAWGNLDILVVDMPPGTGDAQLSMSQRLR--------------- 163
Query: 579 VAIEDVRKEITFCRKTGIPIMGLIEHMSGYECPNCSECTXIF 704
+ + K I +GL+E+MS ++CP C E + IF
Sbjct: 164 --LSGIYKSI----------LGLVENMSCFKCPKCGEKSYIF 193
>09_03_0056 - 11936264-11939677
Length = 1137
Score = 31.1 bits (67), Expect = 0.90
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +3
Query: 447 VYWQELDFLVIDTPPGTSDEHITVMENLRQVPQCSAILVTTPQEVAIE 590
+Y Q++ + +D PG + + + NLR + S + T +E A+E
Sbjct: 816 IYLQDMPYYAVDDTPGRGIQELKNLNNLRGALEISGLHNVTSKEQAVE 863
>02_05_0444 -
29073740-29073844,29074417-29074725,29077910-29077981,
29078541-29078633,29078825-29078982,29079247-29079415,
29080204-29081241,29081632-29081759,29081926-29081985,
29082033-29083077
Length = 1058
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +3
Query: 471 LVIDTPPGTSDEHITVMENLRQVPQCSAILVTTPQEVAIEDVRKEITFCRKTGIPIM 641
L+I PPGT + +R V Q +LVT P A++++ + ++ TG+ I+
Sbjct: 491 LIIQGPPGTGKTVLLTELIVRAVQQGENVLVTAPSNAAVDNMVERLS---NTGLNIV 544
>01_01_0430 + 3258438-3259200,3259929-3261454
Length = 762
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +3
Query: 306 EGWVPVYMDSEQRLGVLSIGFLLTSRNDSVVLRGPK 413
EGW ++S + VLS+ F S NDSVV R PK
Sbjct: 230 EGWCNALVNSTPKDQVLSLPFCKISVNDSVV-RSPK 264
>12_01_0105 - 823302-823770,823902-824006,824149-824540
Length = 321
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +3
Query: 489 PGTSDEHITVMENLRQVPQCSAILVTTPQEVAIEDVRK 602
PG+S + + QCS I VT V +ED K
Sbjct: 243 PGSSSSELQAAAHAGDSSQCSNISVTCSSSVVVEDCNK 280
>06_01_0042 + 410061-410544,411401-411837
Length = 306
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = +3
Query: 468 FLVIDTPPGTSDEHITVMENLRQVPQCSAILVTTPQEVAIEDVRKEITFCRKTGIPIMGL 647
F++ID P G +T + P A+LVTTP A+ D + GI + +
Sbjct: 154 FILIDCPAGVDAGFVTAI-----APAEEAVLVTTPDITALRDADRVAGLLECDGIKDIKI 208
Query: 648 I 650
I
Sbjct: 209 I 209
>05_04_0086 -
17797792-17797810,17798049-17798234,17798319-17798407,
17798518-17798712,17799364-17799525,17799609-17799681,
17799929-17799996,17800086-17800133,17800223-17800288,
17800418-17800488,17800825-17800891
Length = 347
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/25 (44%), Positives = 20/25 (80%)
Frame = +3
Query: 393 VVLRGPKKTSIIKQFLXDVYWQELD 467
VV RG ++TSI + ++ D++W++LD
Sbjct: 98 VVFRGTQETSI-QNWIEDLFWKQLD 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,223,224
Number of Sequences: 37544
Number of extensions: 342752
Number of successful extensions: 770
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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